Holger Froehlich
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/GOSim |
| git_branch: RELEASE_3_14 |
| git_last_commit: 0c5092d |
| git_last_commit_date: 2021-10-26 12:09:55 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:39 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GOSim package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOSim.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 804/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GOSim 1.32.0 (landing page) Holger Froehlich
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GOSim |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GOSim_1.32.0.tar.gz && rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GOSim_1.32.0.zip && rm GOSim_1.32.0.tar.gz GOSim_1.32.0.zip |
| StartedAt: 2022-04-12 05:50:24 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:52:16 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 112.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GOSim_1.32.0.tar.gz && rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GOSim_1.32.0.zip && rm GOSim_1.32.0.tar.gz GOSim_1.32.0.zip
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install for i386
* installing *source* package 'GOSim' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" `C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GOSim.buildbin-libdir/00LOCK-GOSim/00new/GOSim/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GOSim'
finding HTML links ... done
GOenrichment html
IC html
calc.diffusion.kernel html
calcICs html
evaluateClustering html
filterGO html
getAncestors html
getChildren html
getDisjCommAnc html
getGOGraph html
getGOInfo html
getGeneFeatures html
getGeneFeaturesPrototypes html
getGeneSim html
getGeneSimPrototypes html
getMinimumSubsumer html
getOffsprings html
getParents html
getTermSim html
internal html
selectPrototypes html
setEnrichmentFactors html
setEvidenceLevel html
setOntology html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GOSim' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" `C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GOSim.buildbin-libdir/GOSim/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOSim' as GOSim_1.32.0.zip
* DONE (GOSim)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GOSim' successfully unpacked and MD5 sums checked