H. Pagès
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/BSgenome |
| git_branch: RELEASE_3_14 |
| git_last_commit: 9b1859e |
| git_last_commit_date: 2021-10-26 11:49:47 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the BSgenome package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 220/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BSgenome 1.62.0 (landing page) H. Pagès
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: BSgenome |
| Version: 1.62.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BSgenome_1.62.0.tar.gz && rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BSgenome.buildbin-libdir BSgenome_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BSgenome_1.62.0.zip && rm BSgenome_1.62.0.tar.gz BSgenome_1.62.0.zip |
| StartedAt: 2022-04-12 06:08:10 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:10:44 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 153.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BSgenome_1.62.0.tar.gz && rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BSgenome.buildbin-libdir BSgenome_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BSgenome_1.62.0.zip && rm BSgenome_1.62.0.tar.gz BSgenome_1.62.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 5489k 0 7887 0 0 95709 0 0:00:58 --:--:-- 0:00:58 96182
24 5489k 24 1356k 0 0 1255k 0 0:00:04 0:00:01 0:00:03 1254k
65 5489k 65 3622k 0 0 1740k 0 0:00:03 0:00:02 0:00:01 1740k
100 5489k 100 5489k 0 0 1849k 0 0:00:02 0:00:02 --:--:-- 1849k
install for i386
* installing *source* package 'BSgenome' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BSgenome'
finding HTML links ... done
BSParams-class html
finding level-2 HTML links ... done
BSgenome-class html
BSgenome-utils html
BSgenomeForge html
BSgenomeViews-class html
SNPlocs-class html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BSgenome.buildbin-libdir/00LOCK-BSgenome/00new/BSgenome/help/snplocs.html
XtraSNPlocs-class html
available.genomes html
bsapply html
export-methods html
getSeq-methods html
injectSNPs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BSgenome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BSgenome' as BSgenome_1.62.0.zip
* DONE (BSgenome)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BSgenome' successfully unpacked and MD5 sums checked