| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:15 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the BPRMeth package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BPRMeth.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 208/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BPRMeth 1.20.0 (landing page) Chantriolnt-Andreas Kapourani
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: BPRMeth |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BPRMeth_1.20.0.tar.gz && rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BPRMeth_1.20.0.zip && rm BPRMeth_1.20.0.tar.gz BPRMeth_1.20.0.zip |
| StartedAt: 2022-04-12 07:28:46 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:30:58 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 131.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BPRMeth_1.20.0.tar.gz && rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BPRMeth_1.20.0.zip && rm BPRMeth_1.20.0.tar.gz BPRMeth_1.20.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
8 3345k 8 268k 0 0 883k 0 0:00:03 --:--:-- 0:00:03 884k
100 3345k 100 3345k 0 0 2849k 0 0:00:01 0:00:01 --:--:-- 2852k
install for i386
* installing *source* package 'BPRMeth' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BPRMeth.buildbin-libdir/00LOCK-BPRMeth/00new/BPRMeth/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BPRMeth'
finding HTML links ... done
BPRMeth html
bernoulli_data html
beta_data html
binomial_data html
boxplot_cluster_expr html
bpr_cluster_wrap html
bpr_optimize html
bpr_predict_wrap html
cluster_profiles_mle html
cluster_profiles_vb html
create_anno_region html
create_basis html
create_region_object html
design_matrix html
encode_expr html
encode_met html
eval_functions html
gaussian_data html
gex_data html
impute_bulk_met html
infer_profiles_gibbs html
infer_profiles_mle html
infer_profiles_vb html
inner_predict_model_expr html
inner_train_model_expr html
meth_data html
model_log_likelihood html
old_boxplot_cluster_gex html
old_plot_cluster_prof html
old_plot_fitted_profiles html
partition_bulk_dataset html
plot_cluster_profiles html
plot_infer_profiles html
finding level-2 HTML links ... done
plot_predicted_expr html
pool_bs_seq_rep html
predict_expr html
preprocess_bs_seq html
preprocess_final_HTS_data html
process_haib_caltech_wrap html
read_anno html
read_bs_encode_haib html
read_chrom_size html
read_expr html
read_met html
read_rna_encode_caltech html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BPRMeth' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BPRMeth.buildbin-libdir/BPRMeth/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BPRMeth' as BPRMeth_1.20.0.zip
* DONE (BPRMeth)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BPRMeth' successfully unpacked and MD5 sums checked