| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:26 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the ttgsea package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ttgsea.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1973/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ttgsea 1.0.0 (landing page) Dongmin Jung
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: ttgsea |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ttgsea.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ttgsea_1.0.0.tar.gz |
| StartedAt: 2021-10-15 07:01:49 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 07:06:02 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 252.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ttgsea.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ttgsea.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ttgsea_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/ttgsea.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ttgsea/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ttgsea' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ttgsea' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
text_token 4 0.27 17.98
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
predict_model 33.89 1.14 26.97
fit_model 27.31 1.07 28.40
token_vector 2.68 0.11 16.17
text_token 2.59 0.07 16.66
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ttgsea.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ttgsea_1.0.0.tar.gz && rm -rf ttgsea.buildbin-libdir && mkdir ttgsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ttgsea.buildbin-libdir ttgsea_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ttgsea_1.0.0.zip && rm ttgsea_1.0.0.tar.gz ttgsea_1.0.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 140k 100 140k 0 0 613k 0 --:--:-- --:--:-- --:--:-- 615k
install for i386
* installing *source* package 'ttgsea' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ttgsea'
finding HTML links ... done
bi_gru html
bi_lstm html
fit_model html
metric_pearson_correlation html
plot_model html
predict_model html
sampling_generator html
text_token html
token_vector html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ttgsea' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ttgsea' as ttgsea_1.0.0.zip
* DONE (ttgsea)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'ttgsea' successfully unpacked and MD5 sums checked
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ttgsea.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ttgsea)
Loading required package: keras
>
> test_check("ttgsea")
== Skipped tests ===============================================================
* Python is not available on this system (13)
[ FAIL 0 | WARN 0 | SKIP 13 | PASS 0 ]
>
> proc.time()
user system elapsed
6.70 0.46 7.15
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ttgsea.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ttgsea)
Loading required package: keras
>
> test_check("ttgsea")
2021-10-15 07:05:32.006671: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
Train on 1420 samples
32/1420 [..............................] - ETA: 3:11 - loss: 1.8816 - pearson_correlation: -0.0398
96/1420 [=>............................] - ETA: 1:02 - loss: 1.6625 - pearson_correlation: 0.0598
128/1420 [=>............................] - ETA: 46s - loss: 1.6288 - pearson_correlation: -0.0142
192/1420 [===>..........................] - ETA: 29s - loss: 1.6205 - pearson_correlation: 0.0282
224/1420 [===>..........................] - ETA: 25s - loss: 1.6522 - pearson_correlation: 0.0165
256/1420 [====>.........................] - ETA: 21s - loss: 1.5908 - pearson_correlation: -0.0079
288/1420 [=====>........................] - ETA: 19s - loss: 1.5778 - pearson_correlation: 0.0098
320/1420 [=====>........................] - ETA: 16s - loss: 1.5805 - pearson_correlation: 0.0229
352/1420 [======>.......................] - ETA: 15s - loss: 1.5612 - pearson_correlation: 0.0133
384/1420 [=======>......................] - ETA: 13s - loss: 1.5868 - pearson_correlation: 0.0237
416/1420 [=======>......................] - ETA: 12s - loss: 1.5744 - pearson_correlation: 0.0166
448/1420 [========>.....................] - ETA: 11s - loss: 1.5620 - pearson_correlation: 0.0356
480/1420 [=========>....................] - ETA: 10s - loss: 1.5568 - pearson_correlation: 0.0510
512/1420 [=========>....................] - ETA: 9s - loss: 1.5516 - pearson_correlation: 0.0457
544/1420 [==========>...................] - ETA: 8s - loss: 1.5284 - pearson_correlation: 0.0527
576/1420 [===========>..................] - ETA: 7s - loss: 1.5253 - pearson_correlation: 0.0653
608/1420 [===========>..................] - ETA: 7s - loss: 1.5428 - pearson_correlation: 0.0733
640/1420 [============>.................] - ETA: 6s - loss: 1.5453 - pearson_correlation: 0.0864
672/1420 [=============>................] - ETA: 6s - loss: 1.5283 - pearson_correlation: 0.0760
704/1420 [=============>................] - ETA: 5s - loss: 1.5373 - pearson_correlation: 0.0820
736/1420 [==============>...............] - ETA: 5s - loss: 1.5389 - pearson_correlation: 0.0893
768/1420 [===============>..............] - ETA: 4s - loss: 1.5436 - pearson_correlation: 0.0845
800/1420 [===============>..............] - ETA: 4s - loss: 1.5527 - pearson_correlation: 0.1007
832/1420 [================>.............] - ETA: 4s - loss: 1.5406 - pearson_correlation: 0.1014
864/1420 [=================>............] - ETA: 3s - loss: 1.5535 - pearson_correlation: 0.1154
896/1420 [=================>............] - ETA: 3s - loss: 1.5523 - pearson_correlation: 0.1191
928/1420 [==================>...........] - ETA: 3s - loss: 1.5507 - pearson_correlation: 0.1134
960/1420 [===================>..........] - ETA: 2s - loss: 1.5499 - pearson_correlation: 0.1043
992/1420 [===================>..........] - ETA: 2s - loss: 1.5532 - pearson_correlation: 0.1124
1024/1420 [====================>.........] - ETA: 2s - loss: 1.5542 - pearson_correlation: 0.1121
1056/1420 [=====================>........] - ETA: 2s - loss: 1.5563 - pearson_correlation: 0.1136
1088/1420 [=====================>........] - ETA: 1s - loss: 1.5599 - pearson_correlation: 0.1175
1120/1420 [======================>.......] - ETA: 1s - loss: 1.5590 - pearson_correlation: 0.1220
1152/1420 [=======================>......] - ETA: 1s - loss: 1.5607 - pearson_correlation: 0.1344
1184/1420 [========================>.....] - ETA: 1s - loss: 1.5574 - pearson_correlation: 0.1370
1216/1420 [========================>.....] - ETA: 1s - loss: 1.5674 - pearson_correlation: 0.1420
1248/1420 [=========================>....] - ETA: 0s - loss: 1.5722 - pearson_correlation: 0.1395
1280/1420 [==========================>...] - ETA: 0s - loss: 1.5761 - pearson_correlation: 0.1397
1312/1420 [==========================>...] - ETA: 0s - loss: 1.5667 - pearson_correlation: 0.1348
1344/1420 [===========================>..] - ETA: 0s - loss: 1.5637 - pearson_correlation: 0.1366
1376/1420 [============================>.] - ETA: 0s - loss: 1.5638 - pearson_correlation: 0.1322
1408/1420 [============================>.] - ETA: 0s - loss: 1.5608 - pearson_correlation: 0.1269
1420/1420 [==============================] - 7s 5ms/sample - loss: 1.5630 - pearson_correlation: 0.1196
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
48.23 3.04 23.20
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ttgsea.Rcheck/examples_i386/ttgsea-Ex.timings
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ttgsea.Rcheck/examples_x64/ttgsea-Ex.timings
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