| Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:11 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the mitoODEdata package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 234/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
Gregoire Pau
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: mitoODEdata |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:mitoODEdata.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings mitoODEdata_1.26.0.tar.gz |
| StartedAt: 2021-05-06 12:24:10 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 12:27:31 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 200.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: mitoODEdata.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:mitoODEdata.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings mitoODEdata_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/mitoODEdata.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mitoODEdata/DESCRIPTION’ ... OK
* this is package ‘mitoODEdata’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mitoODEdata’ can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'mitoODEdata' is deprecated and will be removed from
See ‘/home/biocbuild/bbs-3.12-data-experiment/meat/mitoODEdata.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 60.0Mb
sub-directories of 1Mb or more:
data 59.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.12-data-experiment/meat/mitoODEdata.Rcheck/00check.log’
for details.
mitoODEdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL mitoODEdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘mitoODEdata’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'mitoODEdata' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package can be loaded from final location Warning: Package 'mitoODEdata' is deprecated and will be removed from Bioconductor version 3.13 ** testing if installed package keeps a record of temporary installation path * DONE (mitoODEdata)
mitoODEdata.Rcheck/mitoODEdata-Ex.timings
| name | user | system | elapsed | |
| getspot | 0.768 | 0.008 | 0.778 | |
| mitoODEdata | 0.528 | 0.016 | 0.544 | |