Djork-Arne Clevert
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/farms |
| Branch: RELEASE_3_12 |
| Last Commit: 0f2f0aa |
| Last Changed Date: 2020-10-27 10:39:00 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:05 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the farms package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 589/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| farms 1.42.0 (landing page) Djork-Arne Clevert
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: farms |
| Version: 1.42.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/farms_1.42.0.tar.gz && rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL farms_1.42.0.zip && rm farms_1.42.0.tar.gz farms_1.42.0.zip |
| StartedAt: 2021-05-05 17:08:06 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:08:40 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 33.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/farms_1.42.0.tar.gz && rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL farms_1.42.0.zip && rm farms_1.42.0.tar.gz farms_1.42.0.zip
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install for i386
* installing *source* package 'farms' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'farms'
finding HTML links ... done
INI_Calls-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INI_Calls-class.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
INIcalls-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INIcalls-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INIcalls-methods.rd:22: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INIcalls-methods.rd:14: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
dummy html
expFarms html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/expFarms.rd:5: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/expFarms.rd:35: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
generateExprVal.method.farms html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/generateExprVal.method.farms.rd:39: file link 'li.wong' in package 'affy' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/generateExprVal.method.farms.rd:39: file link 'medianpolish' in package 'affy' does not exist and so has been treated as a topic
getI_Eset-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getI_Eset-methods.rd:8: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getI_Eset-methods.rd:18: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
getI_ProbeSets-methods html
getNI_Eset-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getNI_Eset-methods.rd:10: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getNI_Eset-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
getNI_ProbeSets-methods html
lFarms html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/lFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/lFarms.rd:32: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
plot-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/plot-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
qFarms html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/qFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/qFarms.rd:33: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
summary-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/summary-methods.rd:19: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic
testAffyBatch html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'farms' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'farms' as farms_1.42.0.zip
* DONE (farms)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'farms' successfully unpacked and MD5 sums checked