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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TarSeqQC.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings TarSeqQC_1.20.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/TarSeqQC.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TarSeqQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TarSeqQC' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TarSeqQC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotNtdPercentage,TargetExperiment: no visible global function
  definition for 'path'
plotRegion,TargetExperiment: no visible global function definition for
  'path'
readFrequencies,TargetExperiment: no visible global function definition
  for 'path'
Undefined global functions or variables:
  path
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                    user system elapsed
TargetExperiment-class             19.45   1.00  565.95
TargetExperiment-plotRegion         2.91   0.14  155.18
TargetExperiment-plotFeature        2.89   0.03  136.49
TargetExperiment-constructor        2.43   0.04   44.02
TargetExperiment-plotNtdPercentage  2.06   0.08   94.98
pileupCounts                        1.68   0.09   85.13
plotInOutFeatures                   1.13   0.05   17.82
TargetExperiment-readFrequencies    0.84   0.02   17.33
TargetExperiment-summarizePanel     0.62   0.05   16.25
** running examples for arch 'x64' ...

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TarSeqQC_1.20.0.tar.gz && rm -rf TarSeqQC.buildbin-libdir && mkdir TarSeqQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TarSeqQC.buildbin-libdir TarSeqQC_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TarSeqQC_1.20.0.zip && rm TarSeqQC_1.20.0.tar.gz TarSeqQC_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1782k  100 1782k    0     0  49.2M      0 --:--:-- --:--:-- --:--:-- 51.2M

install for i386

* installing *source* package 'TarSeqQC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TarSeqQC'
    finding HTML links ... done
    TEList                                  html  
    TarSeqQC-package                        html  
    TargetExperiment-biasExploration        html  
    TargetExperiment-buildFeaturePanel      html  
    TargetExperiment-buildReport            html  
    TargetExperiment-class                  html  
    TargetExperiment-constructor            html  
    TargetExperiment-getters                html  
    TargetExperiment-initialize             html  
    TargetExperiment-plot                   html  
    TargetExperiment-plotAttrExpl           html  
    TargetExperiment-plotAttrPerform        html  
    TargetExperiment-plotFeatPerform        html  
    TargetExperiment-plotFeature            html  
    TargetExperiment-plotGeneAttrPerFeat    html  
    TargetExperiment-plotMetaDataExpl       html  
    TargetExperiment-plotNtdPercentage      html  
    TargetExperiment-plotRegion             html  
    TargetExperiment-print                  html  
    TargetExperiment-readFrequencies        html  
    TargetExperiment-setters                html  
    TargetExperiment-show                   html  
    TargetExperiment-statistics             html  
    TargetExperiment-summarizePanel         html  
    TargetExperimentList-class              html  
    TargetExperimentList-constructor        html  
    TargetExperimentList-initialize         html  
    TargetExperimentList-plotGlobalAttrExpl
                                            html  
    TargetExperimentList-plotPoolPerformance
                                            html  
    ampliPanel                              html  
    ampliPanel2                             html  
    checkBedFasta                           html  
    myCounts                                html  
    object                                  html  
    pileupCounts                            html  
    plotInOutFeatures                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TarSeqQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TarSeqQC' as TarSeqQC_1.20.0.zip
* DONE (TarSeqQC)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'TarSeqQC' successfully unpacked and MD5 sums checked