Lanying Wei
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/SimFFPE |
| Branch: RELEASE_3_12 |
| Last Commit: 3d90ef3 |
| Last Changed Date: 2020-10-27 11:52:54 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:38 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the SimFFPE package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1716/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SimFFPE 1.2.0 (landing page) Lanying Wei
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SimFFPE |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SimFFPE.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings SimFFPE_1.2.0.tar.gz |
| StartedAt: 2021-05-06 07:00:17 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 07:10:03 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 585.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: SimFFPE.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SimFFPE.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings SimFFPE_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/SimFFPE.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SimFFPE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SimFFPE' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SimFFPE' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/readSimFFPE.Rd:82: file link 'rlnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/readSimFFPE.Rd:118: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/readSimFFPE.Rd:124: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/targetReadSimFFPE.Rd:94: file link 'rlnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/targetReadSimFFPE.Rd:130: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/targetReadSimFFPE.Rd:136: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/SimFFPE.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
readSimFFPE 3.14 0.58 83.03
SimFFPE-package 2.61 0.59 81.35
targetReadSimFFPE 0.78 0.34 20.16
calcPhredScoreProfile 0.11 0.00 9.80
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SimFFPE-package 3.05 0.53 79.53
readSimFFPE 3.07 0.43 83.95
targetReadSimFFPE 0.75 0.13 22.16
calcPhredScoreProfile 0.08 0.02 7.70
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'C:/Users/biocbuild/bbs-3.12-bioc/meat/SimFFPE.Rcheck/00check.log'
for details.
SimFFPE.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SimFFPE_1.2.0.tar.gz && rm -rf SimFFPE.buildbin-libdir && mkdir SimFFPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SimFFPE.buildbin-libdir SimFFPE_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SimFFPE_1.2.0.zip && rm SimFFPE_1.2.0.tar.gz SimFFPE_1.2.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 557k 100 557k 0 0 26.3M 0 --:--:-- --:--:-- --:--:-- 27.2M
install for i386
* installing *source* package 'SimFFPE' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SimFFPE'
finding HTML links ... done
SimFFPE-package html
calcPhredScoreProfile html
readSimFFPE html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/readSimFFPE.Rd:82: file link 'rlnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/readSimFFPE.Rd:118: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/readSimFFPE.Rd:124: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
targetReadSimFFPE html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/targetReadSimFFPE.Rd:94: file link 'rlnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/targetReadSimFFPE.Rd:130: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpgBTkUT/R.INSTALL15b42ef75193/SimFFPE/man/targetReadSimFFPE.Rd:136: file link 'rbeta' in package 'stats' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SimFFPE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SimFFPE' as SimFFPE_1.2.0.zip
* DONE (SimFFPE)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'SimFFPE' successfully unpacked and MD5 sums checked
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SimFFPE.Rcheck/examples_i386/SimFFPE-Ex.timings
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SimFFPE.Rcheck/examples_x64/SimFFPE-Ex.timings
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