Christian Arnold
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/SNPhood |
| Branch: RELEASE_3_12 |
| Last Commit: 3ee61dc |
| Last Changed Date: 2020-10-27 11:09:04 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:41 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the SNPhood package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1746/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPhood 1.20.0 (landing page) Christian Arnold
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SNPhood |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SNPhood_1.20.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.20.0.zip && rm SNPhood_1.20.0.tar.gz SNPhood_1.20.0.zip |
| StartedAt: 2021-05-05 18:16:43 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:18:23 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 100.3 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SNPhood_1.20.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.20.0.zip && rm SNPhood_1.20.0.tar.gz SNPhood_1.20.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3966k 100 3966k 0 0 68.7M 0 --:--:-- --:--:-- --:--:-- 70.4M
install for i386
* installing *source* package 'SNPhood' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SNPhood'
finding HTML links ... done
SNPhood-class html
SNPhood html
SNPhood.o html
analyzeSNPhood html
finding level-2 HTML links ... done
annotation-methods html
annotationBins html
annotationBins2 html
annotationDatasets html
annotationReadGroups html
annotationRegions html
associateGenotypes html
bins-methods html
changeObjectIntegrityChecking html
collectFiles html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpI9ra3S/R.INSTALLf1c79ac1263/SNPhood/man/collectFiles.Rd:46: file link 'path' in package 'Rsamtools' does not exist and so has been treated as a topic
convertToAllelicFractions html
counts-method html
datasets-methods html
deleteDatasets html
deleteReadGroups html
deleteRegions html
enrichment-methods html
getDefaultParameterList html
mergeReadGroups html
parameters-methods html
plotAllelicBiasResults html
plotAllelicBiasResultsOverview html
plotAndCalculateCorrelationDatasets html
plotAndCalculateWeakAndStrongGenotype html
plotAndClusterMatrix html
plotAndSummarizeAllelicBiasTest html
plotBinCounts html
plotClusterAverage html
plotFDRResults html
plotGenotypesPerCluster html
plotGenotypesPerSNP html
plotRegionCounts html
readGroups-methods html
regions-methods html
renameBins html
renameDatasets html
renameReadGroups html
renameRegions html
results html
testForAllelicBiases html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SNPhood' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPhood' as SNPhood_1.20.0.zip
* DONE (SNPhood)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'SNPhood' successfully unpacked and MD5 sums checked