Bo Wen
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/PGA |
| Branch: RELEASE_3_12 |
| Last Commit: 4e7418a |
| Last Changed Date: 2020-10-27 11:05:59 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:44 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the PGA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1331/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Bo Wen
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: PGA |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PGA_1.20.0.tar.gz && rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PGA_1.20.0.zip && rm PGA_1.20.0.tar.gz PGA_1.20.0.zip |
| StartedAt: 2021-05-05 19:03:12 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:04:37 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 84.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PGA_1.20.0.tar.gz && rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PGA_1.20.0.zip && rm PGA_1.20.0.tar.gz PGA_1.20.0.zip
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install for i386
* installing *source* package 'PGA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'rTANDEM' is deprecated and will be removed from Bioconductor
version 3.13
** help
*** installing help indices
converting help for package 'PGA'
finding HTML links ... done
PrepareAnnotationEnsembl2 html
finding level-2 HTML links ... done
PrepareAnnotationRefseq2 html
addGeneName4Ensembl html
buildFusionProteinDB html
createProDB4DenovoRNASeq html
dbCreator html
easyRun html
parserGear html
reportGear html
runTandem html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PGA' ...
** testing if installed package can be loaded
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
version 3.13
* MD5 sums
packaged installation of 'PGA' as PGA_1.20.0.zip
* DONE (PGA)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'PGA' successfully unpacked and MD5 sums checked