| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:26 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the NarrowPeaks package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1201/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Pedro Madrigal
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: NarrowPeaks |
| Version: 1.34.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/NarrowPeaks_1.34.0.tar.gz && rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL NarrowPeaks_1.34.0.zip && rm NarrowPeaks_1.34.0.tar.gz NarrowPeaks_1.34.0.zip |
| StartedAt: 2021-05-05 19:16:06 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:16:32 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 25.7 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/NarrowPeaks_1.34.0.tar.gz && rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL NarrowPeaks_1.34.0.zip && rm NarrowPeaks_1.34.0.tar.gz NarrowPeaks_1.34.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 114k 100 114k 0 0 6016k 0 --:--:-- --:--:-- --:--:-- 6386k
install for i386
* installing *source* package 'NarrowPeaks' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore.c -o wig2CSARScore.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o NarrowPeaks.dll tmp.def wig2CSARScore.o wig2CSARScore_R_wrapper.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NarrowPeaks.buildbin-libdir/00LOCK-NarrowPeaks/00new/NarrowPeaks/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'NarrowPeaks'
finding HTML links ... done
NarrowPeaks-internal html
NarrowPeaks-package html
narrowpeaks html
narrowpeaksDiff html
wig2CSARScore html
wigfile_test html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'NarrowPeaks' is deprecated and will be removed from
Bioconductor version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'NarrowPeaks' is deprecated and will be removed from
Bioconductor version 3.13
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'NarrowPeaks' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore.c -o wig2CSARScore.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o NarrowPeaks.dll tmp.def wig2CSARScore.o wig2CSARScore_R_wrapper.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NarrowPeaks.buildbin-libdir/NarrowPeaks/libs/x64
** testing if installed package can be loaded
Warning: Package 'NarrowPeaks' is deprecated and will be removed from
Bioconductor version 3.13
* MD5 sums
packaged installation of 'NarrowPeaks' as NarrowPeaks_1.34.0.zip
* DONE (NarrowPeaks)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'NarrowPeaks' successfully unpacked and MD5 sums checked