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INSTALL report for GeneRegionScan on tokay1

This page was generated on 2021-05-06 12:31:26 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the GeneRegionScan package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 697/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneRegionScan 1.46.0  (landing page)
Lasse Folkersen
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/GeneRegionScan
Branch: RELEASE_3_12
Last Commit: 43d8744
Last Changed Date: 2020-10-27 10:35:37 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: GeneRegionScan
Version: 1.46.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GeneRegionScan_1.46.0.tar.gz && rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GeneRegionScan_1.46.0.zip && rm GeneRegionScan_1.46.0.tar.gz GeneRegionScan_1.46.0.zip
StartedAt: 2021-05-05 17:04:49 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:05:27 -0400 (Wed, 05 May 2021)
EllapsedTime: 38.0 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GeneRegionScan_1.46.0.tar.gz && rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GeneRegionScan_1.46.0.zip && rm GeneRegionScan_1.46.0.tar.gz GeneRegionScan_1.46.0.zip
###
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100 7397k  100 7397k    0     0  77.6M      0 --:--:-- --:--:-- --:--:-- 78.5M

install for i386

* installing *source* package 'GeneRegionScan' ...
** using staged installation
** R
** data
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneRegionScan'
    finding HTML links ... done
    Nondocumented-objects                   html  
    ProbeLevelSet-class                     html  
    addSnpPdata                             html  
    checkForFileInPath                      html  
    doProbeLinear                           html  
    doProbeTTest                            html  
    exampleProbeLevelSet                    html  
    excludeDoubleMatchingProbes             html  
    exonStructure                           html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4edQra/R.INSTALL14fc405677c/GeneRegionScan/man/exonStructure.rd:21: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    findProbePositions                      html  
    findSequenceInGenome                    html  
    geneRegionScan                          html  
    genomic                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4edQra/R.INSTALL14fc405677c/GeneRegionScan/man/genomic.Rd:13: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    getLocalMetaprobeIntensities            html  
    getLocalProbeIntensities                html  
    getMetaprobesetsFromRegionOfInterest    html  
    getProbeLevelAnnotationForExonArrays    html  
    getProbesetsFromMetaprobeset            html  
    getProbesetsFromRegionOfInterest        html  
    getSequence                             html  
    getServerProbeIntensities               html  
    mrna                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4edQra/R.INSTALL14fc405677c/GeneRegionScan/man/mrna.Rd:12: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    plotCoexpression                        html  
    plotOnGene                              html  
    plotStatistics                          html  
    readGeneInput                           html  
    translateSampleNames                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneRegionScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneRegionScan' as GeneRegionScan_1.46.0.zip
* DONE (GeneRegionScan)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'GeneRegionScan' successfully unpacked and MD5 sums checked