| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:34:54 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the EnrichmentBrowser package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 549/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EnrichmentBrowser 2.20.7 (landing page) Ludwig Geistlinger
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: EnrichmentBrowser |
| Version: 2.20.7 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:EnrichmentBrowser.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings EnrichmentBrowser_2.20.7.tar.gz |
| StartedAt: 2021-05-06 01:28:10 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 01:34:50 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 399.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EnrichmentBrowser.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:EnrichmentBrowser.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings EnrichmentBrowser_2.20.7.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/EnrichmentBrowser.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EnrichmentBrowser/DESCRIPTION’ ... OK
* this is package ‘EnrichmentBrowser’ version ‘2.20.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EnrichmentBrowser’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getGOFromBiomart: no visible binding for global variable
‘go_linkage_type’
Undefined global functions or variables:
go_linkage_type
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ebrowser 85.204 21.592 106.956
getGenesets 21.799 0.569 26.065
eaBrowse 11.013 0.768 13.220
deAna 6.120 0.216 6.346
import 5.476 0.130 5.619
compileGRN 5.129 0.216 5.356
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.12-bioc/meat/EnrichmentBrowser.Rcheck/00check.log’
for details.
EnrichmentBrowser.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL EnrichmentBrowser ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘EnrichmentBrowser’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EnrichmentBrowser)
EnrichmentBrowser.Rcheck/EnrichmentBrowser-Ex.timings
| name | user | system | elapsed | |
| combResults | 0.751 | 0.019 | 0.772 | |
| compileGRN | 5.129 | 0.216 | 5.356 | |
| configEBrowser | 0.000 | 0.000 | 0.001 | |
| deAna | 6.120 | 0.216 | 6.346 | |
| downloadPathways | 0 | 0 | 0 | |
| eaBrowse | 11.013 | 0.768 | 13.220 | |
| ebrowser | 85.204 | 21.592 | 106.956 | |
| getGenesets | 21.799 | 0.569 | 26.065 | |
| ggeaGraph | 3.323 | 0.071 | 3.456 | |
| idMap | 0.994 | 0.098 | 1.094 | |
| import | 5.476 | 0.130 | 5.619 | |
| isAvailable | 0 | 0 | 0 | |
| makeExampleData | 0.042 | 0.001 | 0.043 | |
| nbea | 0.436 | 0.009 | 0.447 | |
| normalize | 0.462 | 0.025 | 0.489 | |
| plots | 1.975 | 0.106 | 2.103 | |
| probe2gene | 0.097 | 0.003 | 0.101 | |
| readSE | 0.054 | 0.002 | 0.056 | |
| sbea | 0.294 | 0.005 | 0.300 | |