| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:34:55 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the ERSSA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 567/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ERSSA 1.8.0 (landing page) Zixuan Shao
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: ERSSA |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ERSSA_1.8.0.tar.gz |
| StartedAt: 2021-05-06 01:35:46 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 01:41:11 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 325.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ERSSA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ERSSA_1.8.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/ERSSA.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ERSSA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ERSSA’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ERSSA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
erssa_deseq2 53.761 0.451 54.275
erssa_deseq2_parallel 47.659 0.592 48.313
erssa 13.062 0.194 13.280
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ERSSA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ERSSA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘ERSSA’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ERSSA)
ERSSA.Rcheck/ERSSA-Ex.timings
| name | user | system | elapsed | |
| comb_gen | 0.012 | 0.003 | 0.015 | |
| count_filter | 0.004 | 0.001 | 0.005 | |
| erssa | 13.062 | 0.194 | 13.280 | |
| erssa_deseq2 | 53.761 | 0.451 | 54.275 | |
| erssa_deseq2_parallel | 47.659 | 0.592 | 48.313 | |
| erssa_edger | 2.606 | 0.037 | 2.648 | |
| erssa_edger_parallel | 3.342 | 0.018 | 3.364 | |
| ggplot2_TPR_FPRPlot | 0.521 | 0.003 | 0.525 | |
| ggplot2_dotplot | 0.596 | 0.003 | 0.600 | |
| ggplot2_intersectPlot | 0.568 | 0.002 | 0.572 | |
| ggplot2_marginPlot | 0.455 | 0.004 | 0.459 | |