Nicolae Radu Zabet
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/DMRcaller |
| Branch: RELEASE_3_12 |
| Last Commit: 6b19597 |
| Last Changed Date: 2020-10-27 11:04:12 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:58 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the DMRcaller package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 493/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DMRcaller 1.22.0 (landing page) Nicolae Radu Zabet
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: DMRcaller |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/DMRcaller_1.22.0.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.22.0.zip && rm DMRcaller_1.22.0.tar.gz DMRcaller_1.22.0.zip |
| StartedAt: 2021-05-05 17:06:57 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:07:40 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 42.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/DMRcaller_1.22.0.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.22.0.zip && rm DMRcaller_1.22.0.tar.gz DMRcaller_1.22.0.zip
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install for i386
* installing *source* package 'DMRcaller' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DMRcaller'
finding HTML links ... done
DMRcaller html
finding level-2 HTML links ... done
DMRsNoiseFilterCG html
GEs html
analyseReadsInsideRegionsForCondition html
computeDMRs html
computeDMRsReplicates html
computeMethylationDataCoverage html
computeMethylationDataSpatialCorrelation
html
computeMethylationProfile html
computeOverlapProfile html
extractGC html
filterDMRs html
getWholeChromosomes html
joinReplicates html
mergeDMRsIteratively html
methylationDataList html
plotLocalMethylationProfile html
plotMethylationDataCoverage html
plotMethylationDataSpatialCorrelation html
plotMethylationProfile html
plotMethylationProfileFromData html
plotOverlapProfile html
poolMethylationDatasets html
poolTwoMethylationDatasets html
readBismark html
readBismarkPool html
saveBismark html
syntheticDataReplicates html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DMRcaller' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DMRcaller' as DMRcaller_1.22.0.zip
* DONE (DMRcaller)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'DMRcaller' successfully unpacked and MD5 sums checked