Estefania Mancini
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/ASpli |
| Branch: RELEASE_3_12 |
| Last Commit: 641dc04 |
| Last Changed Date: 2020-10-27 11:16:38 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:29:56 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the ASpli package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 95/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ASpli 2.0.0 (landing page) Estefania Mancini
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ASpli |
| Version: 2.0.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings ASpli_2.0.0.tar.gz |
| StartedAt: 2021-05-06 00:30:57 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 01:02:17 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 1879.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings ASpli_2.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/ASpli.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '2.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ASpli-package 141.94 1.68 143.72
exportIntegratedSignals 76.15 0.14 78.03
exportSplicingReports 73.14 0.16 73.68
integrateSignals 70.13 0.02 70.50
gbDUreport-method 59.26 0.05 59.33
jCounts-methods 59.29 0.01 59.31
jDUreport 58.63 0.02 59.75
gbCounts 55.33 0.01 55.36
splicingReport 54.28 0.02 54.29
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ASpli-package 127.14 0.11 127.39
integrateSignals 73.00 0.00 73.00
splicingReport 70.56 0.02 70.58
jDUreport 67.09 0.04 67.17
jCounts-methods 64.55 0.02 64.57
exportIntegratedSignals 63.53 0.15 67.79
gbCounts 61.88 0.06 66.89
gbDUreport-method 59.95 0.02 60.25
exportSplicingReports 59.35 0.13 62.94
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/ASpli_2.0.0.tar.gz && rm -rf ASpli.buildbin-libdir && mkdir ASpli.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpli.buildbin-libdir ASpli_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ASpli_2.0.0.zip && rm ASpli_2.0.0.tar.gz ASpli_2.0.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 4047k 100 4047k 0 0 17.8M 0 --:--:-- --:--:-- --:--:-- 17.9M
install for i386
* installing *source* package 'ASpli' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ASpli'
finding HTML links ... done
ASpli-deprecated html
ASpli-package html
ASpliAS-class html
ASpliCounts-class html
ASpliCounts html
ASpliDU-class html
ASpliFeatures-class html
ASpliIntegratedSignals-class html
ASpliJDU-class html
ASpliSplicingReport-class html
DUreport html
finding level-2 HTML links ... done
DUreport.norm html
DUreport.offset html
DUreportBinSplice-method html
acc_AS html
acc_DU html
acc_JDU html
acc_MergedReport html
acc_counts html
acc_features html
acc_is html
binGenome-methods html
binGenome html
containsJunctions-function html
example_data html
exportIntegratedSignals html
exportSplicingReports html
filterDU-method html
filterSignals html
gbCounts html
gbDUreport-method html
getConditions-function html
integrateSignals html
jCounts-methods html
jDUreport html
junctionDUreport html
loadBAM html
mergeBinDUAS-method html
plotBins html
plotGenomicRegions html
rds html
show-methods html
splicingReport html
subset-methods html
write-methods html
write html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_2.0.0.zip
* DONE (ASpli)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'ASpli' successfully unpacked and MD5 sums checked
|
ASpli.Rcheck/examples_i386/ASpli-Ex.timings
|
ASpli.Rcheck/examples_x64/ASpli-Ex.timings
|