| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:37:18 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the twoddpcr package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1914/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twoddpcr 1.14.0 (landing page) Anthony Chiu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: twoddpcr |
| Version: 1.14.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings twoddpcr_1.14.0.tar.gz |
| StartedAt: 2021-05-06 07:07:31 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 07:10:00 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 149.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings twoddpcr_1.14.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/twoddpcr.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
knnClassify 8.135 0.159 8.309
ggplot.well 6.430 0.219 6.664
gridClassify 5.320 0.123 5.455
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 156 ]
>
> proc.time()
user system elapsed
10.495 0.508 10.997
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.455 | 0.027 | 0.481 | |
| basicsSummary | 0.008 | 0.001 | 0.009 | |
| castSummary | 0.037 | 0.006 | 0.044 | |
| classCov | 0.069 | 0.009 | 0.079 | |
| classMeans | 0.094 | 0.015 | 0.109 | |
| classStats | 0.101 | 0.014 | 0.116 | |
| clusterCentres | 1.026 | 0.064 | 1.092 | |
| copiesSummary | 0.006 | 0.001 | 0.008 | |
| ddpcrPlate-class | 0.402 | 0.008 | 0.411 | |
| ddpcrWell-class | 0.03 | 0.00 | 0.03 | |
| ddpcrWell-methods | 0.345 | 0.003 | 0.348 | |
| dropletPlot | 4.351 | 0.195 | 4.558 | |
| exportTable | 0.202 | 0.022 | 0.226 | |
| extractPlateName | 0.000 | 0.001 | 0.001 | |
| extractWellNames | 0.000 | 0.000 | 0.001 | |
| facetPlot | 2.434 | 0.055 | 2.496 | |
| flatPlot | 3.976 | 0.200 | 4.208 | |
| fullCopiesSummary | 0.013 | 0.003 | 0.016 | |
| fullCountsSummary | 0.047 | 0.008 | 0.056 | |
| ggplot.well | 6.430 | 0.219 | 6.664 | |
| gridClassify | 5.320 | 0.123 | 5.455 | |
| heatPlot | 1.580 | 0.036 | 1.623 | |
| kmeansClassify | 1.438 | 0.035 | 1.473 | |
| knnClassify | 8.135 | 0.159 | 8.309 | |
| mahalanobisRain | 0.842 | 0.033 | 0.878 | |
| mutantCopiesSummary | 0.006 | 0.001 | 0.008 | |
| numDroplets | 0.460 | 0.008 | 0.469 | |
| parseClusterCounts | 0.023 | 0.006 | 0.029 | |
| plateClassification | 1.495 | 0.028 | 1.525 | |
| plateClassificationMethod | 0.555 | 0.007 | 0.563 | |
| plateSummary | 1.856 | 0.014 | 1.873 | |
| positiveCounts | 0.040 | 0.001 | 0.040 | |
| readCSVDataFrame | 0.019 | 0.004 | 0.024 | |
| relabelClasses | 0.064 | 0.001 | 0.066 | |
| removeDropletClasses | 0.671 | 0.018 | 0.691 | |
| renormalisePlate | 4.020 | 0.068 | 4.096 | |
| sdRain | 2.806 | 0.018 | 2.828 | |
| setChannelNames | 0.002 | 0.001 | 0.003 | |
| setDropletVolume | 0.000 | 0.000 | 0.001 | |
| sortDataFrame | 0.004 | 0.002 | 0.005 | |
| sortWells | 0.421 | 0.002 | 0.423 | |
| thresholdClassify | 2.231 | 0.028 | 2.262 | |
| wellClassification | 0.031 | 0.002 | 0.033 | |
| wellClassificationMethod | 0.041 | 0.001 | 0.042 | |
| whiteTheme | 1.510 | 0.036 | 1.549 | |
| wildTypeCopiesSummary | 0.009 | 0.002 | 0.011 | |