Mike Smith
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/rhdf5 |
| Branch: RELEASE_3_12 |
| Last Commit: ec861b8 |
| Last Changed Date: 2020-10-27 10:44:25 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:15 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the rhdf5 package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1521/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5 2.34.0 (landing page) Mike Smith
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: rhdf5 |
| Version: 2.34.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rhdf5.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings rhdf5_2.34.0.tar.gz |
| StartedAt: 2021-05-06 06:11:53 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 06:14:02 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 129.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: rhdf5.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rhdf5.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings rhdf5_2.34.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/rhdf5.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rhdf5/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rhdf5' version '2.34.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rhdf5' can be installed ... OK
* checking installed package size ... NOTE
installed size is 15.4Mb
sub-directories of 1Mb or more:
libs 14.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.12-bioc/R/library/rhdf5/libs/i386/rhdf5.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.12-bioc/R/library/rhdf5/libs/x64/rhdf5.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.12-bioc/meat/rhdf5.Rcheck/00check.log'
for details.
rhdf5.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/rhdf5_2.34.0.tar.gz && rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL rhdf5_2.34.0.zip && rm rhdf5_2.34.0.tar.gz rhdf5_2.34.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
5 244k 5 14357 0 0 29978 0 0:00:08 --:--:-- 0:00:08 29972
100 244k 100 244k 0 0 490k 0 --:--:-- --:--:-- --:--:-- 491k
install for i386
* installing *source* package 'rhdf5' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/library/Rhdf5lib/lib/i386 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rhdf5'
finding HTML links ... done
H5 html
H5A html
H5D html
H5F html
H5G html
H5I html
H5IdComponent-class html
H5L html
H5O html
H5P html
H5P_DATASET_ACCESS html
H5P_DATASET_CREATE html
H5P_FILE_ACCESS html
H5P_LINK_CREATE html
H5S html
H5T html
h5closeAll html
h5const html
h5createAttribute html
h5createDataset html
h5createFile html
h5createGroup html
h5delete html
h5errorHandling html
h5fileLocking html
h5listIdentifier html
h5ls html
h5save html
h5set_extent html
h5version html
h5write html
methods-And html
methods-Dollar1 html
methods-Dollar2 html
methods-subset1 html
methods-subset2 html
rhdf5 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rhdf5' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/library/Rhdf5lib/lib/x64 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/rhdf5.buildbin-libdir/rhdf5/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rhdf5' as rhdf5_2.34.0.zip
* DONE (rhdf5)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'rhdf5' successfully unpacked and MD5 sums checked
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rhdf5.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rhdf5)
>
> test_check("rhdf5")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 778 ]
>
> proc.time()
user system elapsed
5.98 0.39 6.45
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rhdf5.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rhdf5)
>
> test_check("rhdf5")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 781 ]
>
> proc.time()
user system elapsed
8.21 2.60 11.46
|
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rhdf5.Rcheck/examples_i386/rhdf5-Ex.timings
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rhdf5.Rcheck/examples_x64/rhdf5-Ex.timings
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