| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:09 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the reb package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1484/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Karl J. Dykema
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: reb |
| Version: 1.68.0 |
| Command: rm -rf reb.buildbin-libdir && mkdir reb.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=reb.buildbin-libdir reb_1.68.0.tar.gz |
| StartedAt: 2021-05-06 09:54:04 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:54:42 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 37.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: reb_1.68.0.zip |
| PackageFileSize: 766.2 KiB |
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### Running command:
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### rm -rf reb.buildbin-libdir && mkdir reb.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=reb.buildbin-libdir reb_1.68.0.tar.gz
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install for i386
* installing *source* package 'reb' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c movbin.c -o movbin.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o reb.dll tmp.def movbin.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/reb.buildbin-libdir/00LOCK-reb/00new/reb/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'reb'
finding HTML links ... done
Hs.arms html
absMax html
buildChromCytoband html
buildChromMap html
cset2band html
fromRevIsh html
isAbnormal html
mcr.eset html
movbin html
movt html
naMean html
regmap html
revish html
rmAmbigMappings html
smoothByRegion html
summarizeByRegion html
tBinomTest html
writeGFF3 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'reb' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'reb' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'reb' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c movbin.c -o movbin.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o reb.dll tmp.def movbin.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/reb.buildbin-libdir/reb/libs/x64
** testing if installed package can be loaded
Warning: Package 'reb' is deprecated and will be removed from Bioconductor
version 3.13
* MD5 sums
packaged installation of 'reb' as reb_1.68.0.zip
* DONE (reb)