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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/prada_1.66.0.tar.gz && rm -rf prada.buildbin-libdir && mkdir prada.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=prada.buildbin-libdir prada_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL prada_1.66.0.zip && rm prada_1.66.0.tar.gz prada_1.66.0.zip
###
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install for i386

* installing *source* package 'prada' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c inPolygon.c -o inPolygon.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o prada.dll tmp.def inPolygon.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/prada.buildbin-libdir/00LOCK-prada/00new/prada/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'prada'
    finding HTML links ... done
    analysePlate                            html  
    as.all                                  html  
    barploterrbar                           html  
    combineFrames                           html  
    csApply                                 html  
    cytoFrame-class                         html  
    cytoSet-class                           html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcJCuiM/R.INSTALLbcc66d921e3/prada/man/cytoSet-class.Rd:88: file link 'phenoData-class' in package 'Biobase' does not exist and so has been treated as a topic
    data-cytoFrame                          html  
    data-cytoSet                            html  
    devDims                                 html  
    devRes                                  html  
    fitNorm2                                html  
    gate-class                              html  
    gateSet-class                           html  
    getAlphaNumeric                         html  
    getPradaPar                             html  
    new-internal                            html  
    plotNorm2                               html  
    plotPlate                               html  
    readCytoSet                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcJCuiM/R.INSTALLbcc66d921e3/prada/man/readCytoSet.Rd:11: file link 'dir' in package 'base' does not exist and so has been treated as a topic
    readFCS                                 html  
    readFCSaux                              html  
    removeCensored                          html  
    tcltkProgress                           html  
    threePanelPlot                          html  
    thresholds                              html  
    touchFCS                                html  
    vpLocation                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'prada' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'prada' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'prada' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c inPolygon.c -o inPolygon.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o prada.dll tmp.def inPolygon.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/prada.buildbin-libdir/prada/libs/x64
** testing if installed package can be loaded
Warning: Package 'prada' is deprecated and will be removed from Bioconductor
  version 3.13
* MD5 sums
packaged installation of 'prada' as prada_1.66.0.zip
* DONE (prada)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'prada' successfully unpacked and MD5 sums checked