| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:28:33 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the peco package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1324/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| peco 1.2.0 (landing page) Chiaowen Joyce Hsiao
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: peco |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:peco.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings peco_1.2.0.tar.gz |
| StartedAt: 2021-05-06 04:23:27 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:37:40 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 852.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: peco.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:peco.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings peco_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/peco.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘peco/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘peco’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘peco’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fit_trendfilter 58.504 0.432 70.130
cycle_npreg_outsample 2.700 0.244 254.504
fit_loess 0.864 0.112 12.853
fit_cyclical_many 0.624 0.144 268.662
data_transform_quantile 0.604 0.076 13.796
fit_bspline 0.576 0.048 11.694
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
peco.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL peco ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘peco’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (peco)
peco.Rcheck/peco-Ex.timings
| name | user | system | elapsed | |
| circ_dist | 0.016 | 0.000 | 0.018 | |
| cycle_npreg_insample | 0 | 0 | 0 | |
| cycle_npreg_outsample | 2.700 | 0.244 | 254.504 | |
| data_transform_quantile | 0.604 | 0.076 | 13.796 | |
| fit_bspline | 0.576 | 0.048 | 11.694 | |
| fit_cyclical_many | 0.624 | 0.144 | 268.662 | |
| fit_loess | 0.864 | 0.112 | 12.853 | |
| fit_trendfilter | 58.504 | 0.432 | 70.130 | |
| intensity2circle | 0.264 | 0.000 | 0.264 | |
| rotation | 0.048 | 0.000 | 0.048 | |
| shift_origin | 0.000 | 0.000 | 0.003 | |