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###
### Running command:
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###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/flowPeaks_1.36.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.36.0.zip && rm flowPeaks_1.36.0.tar.gz flowPeaks_1.36.0.zip
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100  908k  100  908k    0     0  5797k      0 --:--:-- --:--:-- --:--:-- 5860k

install for i386

* installing *source* package 'flowPeaks' ...
** using staged installation
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386/Rscript.exe" "../tools/winlibs.R"	
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  if(levels.size()<(i+1)){
     ~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c Rregistrate.cpp -o Rregistrate.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  if(!triangulate & plot & !debug)
     ^~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c flowPeaks.cpp -o flowPeaks.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c func_collect.cpp -o func_collect.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c func_collect_supp.cpp -o func_collect_supp.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gvector_gmatrix.cpp -o gvector_gmatrix.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c kd_tree.cpp -o kd_tree.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c kmns.cpp -o kmns.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/i386 -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/flowPeaks.buildbin-libdir/00LOCK-flowPeaks/00new/flowPeaks/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowPeaks'
    finding HTML links ... done
    adjust.flowPeaks                        html  
    assign.flowPeaks                        html  
    barcode                                 html  
    concave                                 html  
    evalCluster                             html  
    flowPeaks                               html  
    plot.flowPeaks                          html  
    print.flowPeaks                         html  
    summary.flowPeaks                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64/Rscript.exe" "../tools/winlibs.R"	
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  if(levels.size()<(i+1)){
     ~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c Rregistrate.cpp -o Rregistrate.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  if(!triangulate & plot & !debug)
     ^~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c flowPeaks.cpp -o flowPeaks.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c func_collect.cpp -o func_collect.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c func_collect_supp.cpp -o func_collect_supp.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gvector_gmatrix.cpp -o gvector_gmatrix.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c kd_tree.cpp -o kd_tree.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c kmns.cpp -o kmns.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.36.0.zip
* DONE (flowPeaks)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked