Zhen Wei
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/exomePeak2 |
| Branch: RELEASE_3_12 |
| Last Commit: a214469 |
| Last Changed Date: 2020-10-27 11:53:58 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:04 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the exomePeak2 package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 577/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| exomePeak2 1.2.0 (landing page) Zhen Wei
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: exomePeak2 |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/exomePeak2_1.2.0.tar.gz && rm -rf exomePeak2.buildbin-libdir && mkdir exomePeak2.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomePeak2.buildbin-libdir exomePeak2_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL exomePeak2_1.2.0.zip && rm exomePeak2_1.2.0.tar.gz exomePeak2_1.2.0.zip |
| StartedAt: 2021-05-05 18:18:29 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:19:51 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 82.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/exomePeak2_1.2.0.tar.gz && rm -rf exomePeak2.buildbin-libdir && mkdir exomePeak2.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomePeak2.buildbin-libdir exomePeak2_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL exomePeak2_1.2.0.zip && rm exomePeak2_1.2.0.tar.gz exomePeak2_1.2.0.zip
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install for i386
* installing *source* package 'exomePeak2' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
In .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** help
*** installing help indices
converting help for package 'exomePeak2'
finding HTML links ... done
ExonPlot html
GC_content_over_grl html
GCsizeFactors-methods html
GLM_inference html
LibraryType-methods html
MeripBamFileList-class html
finding level-2 HTML links ... done
Parameter-methods html
Results-methods html
SummarizedExomePeak-class html
call_peaks_with_GLM html
consDESeq2_DM html
consDESeq2_M html
convertTxDb html
ctest html
decision_deseq2 html
disj_background html
estimateSeqDepth-methods html
exomePeak2 html
exomePeak2Results-methods html
exomePeakCalling-methods html
exome_bins_from_txdb html
exons_by_unique_gene html
exportResults-methods html
flank_on_exons html
glmDM-methods html
glmM-methods html
mclust_bg html
normalizeGC-methods html
plotExonLength-methods html
plotLfcGC-methods html
plotReadsGC-methods html
plotSizeFactors-methods html
quiet html
reads_five_POS html
reads_five_POS_rev html
reduce_peaks html
remove_introns html
replace_bg html
scanMeripBAM html
split_by_name html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package can be loaded from final location
Warning in .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'exomePeak2' ...
** testing if installed package can be loaded
Warning in .recacheSubclasses(def@className, def, env) :
undefined subclass "numericVector" of class "Mnumeric"; definition not updated
* MD5 sums
packaged installation of 'exomePeak2' as exomePeak2_1.2.0.zip
* DONE (exomePeak2)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'exomePeak2' successfully unpacked and MD5 sums checked