Markus List
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/SPONGE |
| Branch: RELEASE_3_12 |
| Last Commit: 33265cf |
| Last Changed Date: 2020-10-27 11:26:57 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:45 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the SPONGE package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1777/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPONGE 1.12.0 (landing page) Markus List
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SPONGE |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SPONGE_1.12.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.12.0.zip && rm SPONGE_1.12.0.tar.gz SPONGE_1.12.0.zip |
| StartedAt: 2021-05-05 17:19:33 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:20:29 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 56.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SPONGE_1.12.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.12.0.zip && rm SPONGE_1.12.0.tar.gz SPONGE_1.12.0.zip
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SPONGE'
finding HTML links ... done
ceRNA_interactions html
check_and_convert_expression_data html
fn_elasticnet html
fn_gene_miRNA_F_test html
fn_get_model_coef html
fn_get_rss html
fn_get_shared_miRNAs html
gene_expr html
genes_pairwise_combinations html
mir_expr html
mir_interactions html
mircode_ensg html
mircode_symbol html
precomputed_cov_matrices html
precomputed_null_model html
sample_zero_mscor_cov html
sample_zero_mscor_data html
sponge html
sponge_build_null_model html
sponge_compute_p_values html
sponge_edge_centralities html
sponge_gene_miRNA_interaction_filter html
sponge_network html
sponge_node_centralities html
sponge_plot_network html
sponge_plot_network_centralities html
sponge_plot_simulation_results html
sponge_run_benchmark html
sponge_subsampling html
targetscan_ensg html
targetscan_symbol html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SPONGE' as SPONGE_1.12.0.zip
* DONE (SPONGE)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'SPONGE' successfully unpacked and MD5 sums checked