Denes Turei
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/OmnipathR |
| Branch: RELEASE_3_12 |
| Last Commit: 2c98139 |
| Last Changed Date: 2020-10-27 11:50:30 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:37 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the OmnipathR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1260/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 2.0.0 (landing page) Denes Turei
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: OmnipathR |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OmnipathR_2.0.0.tar.gz && rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmnipathR.buildbin-libdir OmnipathR_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OmnipathR_2.0.0.zip && rm OmnipathR_2.0.0.tar.gz OmnipathR_2.0.0.zip |
| StartedAt: 2021-05-05 18:28:30 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:29:50 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 80.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OmnipathR_2.0.0.tar.gz && rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmnipathR.buildbin-libdir OmnipathR_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OmnipathR_2.0.0.zip && rm OmnipathR_2.0.0.tar.gz OmnipathR_2.0.0.zip
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install for i386
* installing *source* package 'OmnipathR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to '>'
** help
*** installing help indices
converting help for package 'OmnipathR'
finding HTML links ... done
OmnipathR html
dot-omnipath_options_defaults html
get_annotation_resources html
get_complex_genes html
get_complex_resources html
get_enzsub_resources html
get_interaction_resources html
get_intercell_categories html
get_intercell_generic_categories html
get_intercell_resources html
get_resources html
get_signed_ptms html
import_all_interactions html
import_dorothea_interactions html
import_intercell_network html
import_kinaseextra_interactions html
import_ligrecextra_interactions html
import_lncrna_mrna_interactions html
import_mirnatarget_interactions html
import_omnipath_annotations html
import_omnipath_complexes html
import_omnipath_enzsub html
import_omnipath_interactions html
import_omnipath_intercell html
import_pathwayextra_interactions html
import_post_translational_interactions
html
import_tf_mirna_interactions html
import_tf_target_interactions html
import_transcriptional_interactions html
interaction_graph html
pivot_annotations html
print_interactions html
print_path_es html
print_path_vs html
ptms_graph html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OmnipathR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmnipathR' as OmnipathR_2.0.0.zip
* DONE (OmnipathR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'OmnipathR' successfully unpacked and MD5 sums checked