Thomas Carroll
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/Herper |
| Branch: RELEASE_3_12 |
| Last Commit: 3ab5705 |
| Last Changed Date: 2021-02-26 12:23:21 -0400 (Fri, 26 Feb 2021) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:44 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the Herper package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 826/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Herper 1.0.2 (landing page) Thomas Carroll
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Herper |
| Version: 1.0.2 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Herper.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings Herper_1.0.2.tar.gz |
| StartedAt: 2021-05-06 03:36:07 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:08:18 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 1930.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Herper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Herper.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings Herper_1.0.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/Herper.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Herper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Herper' version '1.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Herper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ListCondaEnvironments 0.25 0.41 285.00
UseEnvironments 0.08 0.17 192.77
install_CondaSysReqs 0.07 0.11 13.17
ListCondaPackages 0.02 0.05 5.11
SaveEnvironments 0.02 0.01 7.81
search_conda 0.00 0.00 5.04
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ListCondaEnvironments 0.21 0.35 432.53
UseEnvironments 0.05 0.19 214.86
install_CondaSysReqs 0.06 0.17 24.12
ListCondaPackages 0.04 0.01 8.39
SaveEnvironments 0.00 0.02 13.07
install_CondaTools 0.00 0.00 11.25
search_conda 0.00 0.00 6.67
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Herper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/Herper_1.0.2.tar.gz && rm -rf Herper.buildbin-libdir && mkdir Herper.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Herper.buildbin-libdir Herper_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL Herper_1.0.2.zip && rm Herper_1.0.2.tar.gz Herper_1.0.2.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 587k 100 587k 0 0 37.3M 0 --:--:-- --:--:-- --:--:-- 40.9M
install for i386
* installing *source* package 'Herper' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Herper'
finding HTML links ... done
ListCondaEnvironments html
ListCondaPackages html
SaveEnvironments html
UseEnvironments html
conda_create_silentJSON html
conda_install_silentJSON html
install_CondaSysReqs html
install_CondaTools html
search_conda html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Herper' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Herper' as Herper_1.0.2.zip
* DONE (Herper)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'Herper' successfully unpacked and MD5 sums checked
|
Herper.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Herper)
Loading required package: reticulate
>
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86.exe'
Content type 'application/octet-stream' length 56793496 bytes (54.2 MB)
==================================================
downloaded 54.2 MB
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.12-\tmpdir\RTMPGL~2\Test
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2021.4.13 | h9f7ea03_1 115 KB
certifi-2020.12.5 | py38h9f7ea03_0 141 KB
cffi-1.14.5 | py38hb88044d_0 214 KB
chardet-4.0.0 |py38h9f7ea03_1003 236 KB
conda-4.10.1 | py38h9f7ea03_1 2.9 MB
conda-package-handling-1.7.3| py38h559d222_1 674 KB
cryptography-3.4.7 | py38h2dc1c97_0 609 KB
idna-2.10 | pyhd3eb1b0_0 52 KB
openssl-1.1.1k | hc431981_0 4.4 MB
pip-21.0.1 | py38h9f7ea03_0 1.8 MB
pyopenssl-20.0.1 | pyhd3eb1b0_1 49 KB
requests-2.25.1 | pyhd3eb1b0_0 52 KB
ruamel_yaml-0.15.100 | py38hc431981_0 261 KB
setuptools-52.0.0 | py38h9f7ea03_0 712 KB
sqlite-3.35.4 | hc431981_0 743 KB
tqdm-4.59.0 | pyhd3eb1b0_1 93 KB
urllib3-1.26.4 | pyhd3eb1b0_0 105 KB
vc-14.2 | h21ff451_1 8 KB
vs2015_runtime-14.27.29016 | h5e58377_2 1000 KB
wheel-0.36.2 | pyhd3eb1b0_0 33 KB
------------------------------------------------------------
Total: 14.1 MB
The following packages will be REMOVED:
zlib-1.2.11-h33f27b4_4
The following packages will be UPDATED:
ca-certificates 2020.10.14-he931aee_0 --> 2021.4.13-h9f7ea03_1
certifi pkgs/main/noarch::certifi-2020.6.20-p~ --> pkgs/main/win-32::certifi-2020.12.5-py38h9f7ea03_0
cffi 1.14.3-py38hb88044d_2 --> 1.14.5-py38hb88044d_0
chardet 3.0.4-py38h9f7ea03_1003 --> 4.0.0-py38h9f7ea03_1003
conda 4.9.2-py38h9f7ea03_0 --> 4.10.1-py38h9f7ea03_1
conda-package-han~ 1.7.2-py38ha391c2e_0 --> 1.7.3-py38h559d222_1
cryptography 3.2.1-py38hb88044d_1 --> 3.4.7-py38h2dc1c97_0
openssl 1.1.1h-he774522_0 --> 1.1.1k-hc431981_0
pip 20.2.4-py38h9f7ea03_0 --> 21.0.1-py38h9f7ea03_0
pyopenssl 19.1.0-pyhd3eb1b0_1 --> 20.0.1-pyhd3eb1b0_1
requests 2.24.0-py_0 --> 2.25.1-pyhd3eb1b0_0
ruamel_yaml 0.15.87-py38he774522_1 --> 0.15.100-py38hc431981_0
setuptools 50.3.1-py38h9f7ea03_1 --> 52.0.0-py38h9f7ea03_0
sqlite 3.33.0-h2a8f88b_0 --> 3.35.4-hc431981_0
tqdm 4.51.0-pyhd3eb1b0_0 --> 4.59.0-pyhd3eb1b0_1
urllib3 1.25.11-py_0 --> 1.26.4-pyhd3eb1b0_0
vc 14.1-h0510ff6_4 --> 14.2-h21ff451_1
vs2015_runtime 14.16.27012-hf0eaf9b_3 --> 14.27.29016-h5e58377_2
wheel 0.35.1-pyhd3eb1b0_0 --> 0.36.2-pyhd3eb1b0_0
The following packages will be DOWNGRADED:
idna 2.10-py_0 --> 2.10-pyhd3eb1b0_0
Downloading and Extracting Packages
chardet-4.0.0 | 236 KB | | 0%
chardet-4.0.0 | 236 KB | 6 | 7%
chardet-4.0.0 | 236 KB | ########## | 100%
chardet-4.0.0 | 236 KB | ########## | 100%
vc-14.2 | 8 KB | | 0%
vc-14.2 | 8 KB | ########## | 100%
idna-2.10 | 52 KB | | 0%
idna-2.10 | 52 KB | ########## | 100%
tqdm-4.59.0 | 93 KB | | 0%
tqdm-4.59.0 | 93 KB | ########## | 100%
ca-certificates-2021 | 115 KB | | 0%
ca-certificates-2021 | 115 KB | ########## | 100%
cffi-1.14.5 | 214 KB | | 0%
cffi-1.14.5 | 214 KB | ########## | 100%
cffi-1.14.5 | 214 KB | ########## | 100%
conda-4.10.1 | 2.9 MB | | 0%
conda-4.10.1 | 2.9 MB | #######9 | 80%
conda-4.10.1 | 2.9 MB | ########## | 100%
cryptography-3.4.7 | 609 KB | | 0%
cryptography-3.4.7 | 609 KB | ########## | 100%
cryptography-3.4.7 | 609 KB | ########## | 100%
wheel-0.36.2 | 33 KB | | 0%
wheel-0.36.2 | 33 KB | ########## | 100%
vs2015_runtime-14.27 | 1000 KB | | 0%
vs2015_runtime-14.27 | 1000 KB | ########## | 100%
vs2015_runtime-14.27 | 1000 KB | ########## | 100%
ruamel_yaml-0.15.100 | 261 KB | | 0%
ruamel_yaml-0.15.100 | 261 KB | ########## | 100%
sqlite-3.35.4 | 743 KB | | 0%
sqlite-3.35.4 | 743 KB | ########## | 100%
sqlite-3.35.4 | 743 KB | ########## | 100%
pip-21.0.1 | 1.8 MB | | 0%
pip-21.0.1 | 1.8 MB | ########## | 100%
pip-21.0.1 | 1.8 MB | ########## | 100%
pyopenssl-20.0.1 | 49 KB | | 0%
pyopenssl-20.0.1 | 49 KB | ########## | 100%
urllib3-1.26.4 | 105 KB | | 0%
urllib3-1.26.4 | 105 KB | ########## | 100%
requests-2.25.1 | 52 KB | | 0%
requests-2.25.1 | 52 KB | ########## | 100%
setuptools-52.0.0 | 712 KB | | 0%
setuptools-52.0.0 | 712 KB | ########## | 100%
setuptools-52.0.0 | 712 KB | ########## | 100%
certifi-2020.12.5 | 141 KB | | 0%
certifi-2020.12.5 | 141 KB | ########## | 100%
conda-package-handli | 674 KB | | 0%
conda-package-handli | 674 KB | ########## | 100%
conda-package-handli | 674 KB | ########## | 100%
openssl-1.1.1k | 4.4 MB | | 0%
openssl-1.1.1k | 4.4 MB | ######3 | 63%
openssl-1.1.1k | 4.4 MB | ########## | 100%
openssl-1.1.1k | 4.4 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.12-\tmpdir\RTMPGL~2\Test\envs\r-reticulate
added / updated specs:
- numpy
- python=3.6
The following packages will be downloaded:
package | build
---------------------------|-----------------
blas-1.0 | mkl 6 KB
certifi-2018.4.16 | py36_0 143 KB conda-forge
intel-openmp-2021.2.0 | h9f7ea03_616 1.2 MB
mkl-2020.2 | 256 56.5 MB
mkl-service-2.3.0 | py36hdb075cb_0 40 KB
mkl_fft-1.0.9 | py36_0 112 KB conda-forge
mkl_random-1.0.1 | py36_0 216 KB conda-forge
numpy-1.19.2 | py36h0f2e2a7_0 22 KB
numpy-base-1.19.2 | py36hfe54e71_0 3.6 MB
pip-21.1.1 | pyhd8ed1ab_0 1.1 MB conda-forge
python-3.6.5 | 1 18.1 MB conda-forge
setuptools-39.0.1 | py36_0 572 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
wheel-0.36.2 | pyhd3deb0d_0 31 KB conda-forge
wincertstore-0.2 | py36_0 11 KB conda-forge
------------------------------------------------------------
Total: 81.6 MB
The following NEW packages will be INSTALLED:
blas pkgs/main/win-32::blas-1.0-mkl
certifi conda-forge/win-32::certifi-2018.4.16-py36_0
intel-openmp pkgs/main/win-32::intel-openmp-2021.2.0-h9f7ea03_616
mkl pkgs/main/win-32::mkl-2020.2-256
mkl-service pkgs/main/win-32::mkl-service-2.3.0-py36hdb075cb_0
mkl_fft conda-forge/win-32::mkl_fft-1.0.9-py36_0
mkl_random conda-forge/win-32::mkl_random-1.0.1-py36_0
numpy pkgs/main/win-32::numpy-1.19.2-py36h0f2e2a7_0
numpy-base pkgs/main/win-32::numpy-base-1.19.2-py36hfe54e71_0
pip conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
python conda-forge/win-32::python-3.6.5-1
setuptools conda-forge/win-32::setuptools-39.0.1-py36_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
vc pkgs/main/win-32::vc-14.2-h21ff451_1
vs2015_runtime pkgs/main/win-32::vs2015_runtime-14.27.29016-h5e58377_2
wheel conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
wincertstore conda-forge/win-32::wincertstore-0.2-py36_0
Downloading and Extracting Packages
setuptools-39.0.1 | 572 KB | | 0%
setuptools-39.0.1 | 572 KB | 2 | 3%
setuptools-39.0.1 | 572 KB | ########1 | 81%
setuptools-39.0.1 | 572 KB | ########## | 100%
wincertstore-0.2 | 11 KB | | 0%
wincertstore-0.2 | 11 KB | ########## | 100%
wincertstore-0.2 | 11 KB | ########## | 100%
wheel-0.36.2 | 31 KB | | 0%
wheel-0.36.2 | 31 KB | ########## | 100%
mkl_fft-1.0.9 | 112 KB | | 0%
mkl_fft-1.0.9 | 112 KB | ########## | 100%
certifi-2018.4.16 | 143 KB | | 0%
certifi-2018.4.16 | 143 KB | ########## | 100%
numpy-base-1.19.2 | 3.6 MB | | 0%
numpy-base-1.19.2 | 3.6 MB | | 0%
numpy-base-1.19.2 | 3.6 MB | ##1 | 22%
numpy-base-1.19.2 | 3.6 MB | ########## | 100%
numpy-base-1.19.2 | 3.6 MB | ########## | 100%
mkl-2020.2 | 56.5 MB | | 0%
mkl-2020.2 | 56.5 MB | 1 | 1%
mkl-2020.2 | 56.5 MB | 7 | 7%
mkl-2020.2 | 56.5 MB | ## | 20%
mkl-2020.2 | 56.5 MB | ###6 | 36%
mkl-2020.2 | 56.5 MB | #####6 | 57%
mkl-2020.2 | 56.5 MB | ######8 | 68%
mkl-2020.2 | 56.5 MB | ######## | 81%
mkl-2020.2 | 56.5 MB | #########2 | 93%
mkl-2020.2 | 56.5 MB | ########## | 100%
six-1.16.0 | 14 KB | | 0%
six-1.16.0 | 14 KB | ########## | 100%
numpy-1.19.2 | 22 KB | | 0%
numpy-1.19.2 | 22 KB | ########## | 100%
mkl-service-2.3.0 | 40 KB | | 0%
mkl-service-2.3.0 | 40 KB | ########## | 100%
pip-21.1.1 | 1.1 MB | | 0%
pip-21.1.1 | 1.1 MB | ####### | 70%
pip-21.1.1 | 1.1 MB | ########## | 100%
pip-21.1.1 | 1.1 MB | ########## | 100%
intel-openmp-2021.2. | 1.2 MB | | 0%
intel-openmp-2021.2. | 1.2 MB | ########## | 100%
intel-openmp-2021.2. | 1.2 MB | ########## | 100%
blas-1.0 | 6 KB | | 0%
blas-1.0 | 6 KB | ########## | 100%
python-3.6.5 | 18.1 MB | | 0%
python-3.6.5 | 18.1 MB | 9 | 9%
python-3.6.5 | 18.1 MB | ###2 | 32%
python-3.6.5 | 18.1 MB | #### | 40%
python-3.6.5 | 18.1 MB | #####7 | 58%
python-3.6.5 | 18.1 MB | #######1 | 71%
python-3.6.5 | 18.1 MB | ########## | 100%
python-3.6.5 | 18.1 MB | ########## | 100%
mkl_random-1.0.1 | 216 KB | | 0%
mkl_random-1.0.1 | 216 KB | ########## | 100%
mkl_random-1.0.1 | 216 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
# $ conda activate r-reticulate
#
# To deactivate an active environment, use
#
# $ conda deactivate
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 3 ]
>
> proc.time()
user system elapsed
2.18 1.53 211.96
|
Herper.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Herper)
Loading required package: reticulate
>
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe'
Content type 'application/octet-stream' length 59801432 bytes (57.0 MB)
==================================================
downloaded 57.0 MB
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.12-\tmpdir\RTMPEE~1\Test
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2021.4.13 | haa95532_1 115 KB
certifi-2020.12.5 | py38haa95532_0 141 KB
cffi-1.14.5 | py38hcd4344a_0 224 KB
chardet-4.0.0 |py38haa95532_1003 211 KB
conda-4.10.1 | py38haa95532_1 2.9 MB
conda-package-handling-1.7.3| py38h8cc25b3_1 721 KB
cryptography-3.4.7 | py38h71e12ea_0 643 KB
idna-2.10 | pyhd3eb1b0_0 52 KB
openssl-1.1.1k | h2bbff1b_0 4.8 MB
pip-21.0.1 | py38haa95532_0 1.8 MB
pyopenssl-20.0.1 | pyhd3eb1b0_1 49 KB
requests-2.25.1 | pyhd3eb1b0_0 52 KB
ruamel_yaml-0.15.100 | py38h2bbff1b_0 273 KB
setuptools-52.0.0 | py38haa95532_0 726 KB
sqlite-3.35.4 | h2bbff1b_0 761 KB
tqdm-4.59.0 | pyhd3eb1b0_1 93 KB
urllib3-1.26.4 | pyhd3eb1b0_0 105 KB
vc-14.2 | h21ff451_1 8 KB
vs2015_runtime-14.27.29016 | h5e58377_2 1007 KB
wheel-0.36.2 | pyhd3eb1b0_0 33 KB
------------------------------------------------------------
Total: 14.6 MB
The following packages will be REMOVED:
zlib-1.2.11-h62dcd97_4
The following packages will be UPDATED:
ca-certificates 2020.10.14-0 --> 2021.4.13-haa95532_1
certifi pkgs/main/noarch::certifi-2020.6.20-p~ --> pkgs/main/win-64::certifi-2020.12.5-py38haa95532_0
cffi 1.14.3-py38hcd4344a_2 --> 1.14.5-py38hcd4344a_0
chardet 3.0.4-py38haa95532_1003 --> 4.0.0-py38haa95532_1003
conda 4.9.2-py38haa95532_0 --> 4.10.1-py38haa95532_1
conda-package-han~ 1.7.2-py38h76e460a_0 --> 1.7.3-py38h8cc25b3_1
cryptography 3.2.1-py38hcd4344a_1 --> 3.4.7-py38h71e12ea_0
openssl 1.1.1h-he774522_0 --> 1.1.1k-h2bbff1b_0
pip 20.2.4-py38haa95532_0 --> 21.0.1-py38haa95532_0
pyopenssl 19.1.0-pyhd3eb1b0_1 --> 20.0.1-pyhd3eb1b0_1
requests 2.24.0-py_0 --> 2.25.1-pyhd3eb1b0_0
ruamel_yaml 0.15.87-py38he774522_1 --> 0.15.100-py38h2bbff1b_0
setuptools 50.3.1-py38haa95532_1 --> 52.0.0-py38haa95532_0
sqlite 3.33.0-h2a8f88b_0 --> 3.35.4-h2bbff1b_0
tqdm 4.51.0-pyhd3eb1b0_0 --> 4.59.0-pyhd3eb1b0_1
urllib3 1.25.11-py_0 --> 1.26.4-pyhd3eb1b0_0
vc 14.1-h0510ff6_4 --> 14.2-h21ff451_1
vs2015_runtime 14.16.27012-hf0eaf9b_3 --> 14.27.29016-h5e58377_2
wheel 0.35.1-pyhd3eb1b0_0 --> 0.36.2-pyhd3eb1b0_0
The following packages will be DOWNGRADED:
idna 2.10-py_0 --> 2.10-pyhd3eb1b0_0
Downloading and Extracting Packages
ruamel_yaml-0.15.100 | 273 KB | | 0%
ruamel_yaml-0.15.100 | 273 KB | 5 | 6%
ruamel_yaml-0.15.100 | 273 KB | ########## | 100%
ruamel_yaml-0.15.100 | 273 KB | ########## | 100%
urllib3-1.26.4 | 105 KB | | 0%
urllib3-1.26.4 | 105 KB | ########## | 100%
urllib3-1.26.4 | 105 KB | ########## | 100%
ca-certificates-2021 | 115 KB | | 0%
ca-certificates-2021 | 115 KB | ########## | 100%
openssl-1.1.1k | 4.8 MB | | 0%
openssl-1.1.1k | 4.8 MB | ##3 | 23%
openssl-1.1.1k | 4.8 MB | ########## | 100%
openssl-1.1.1k | 4.8 MB | ########## | 100%
certifi-2020.12.5 | 141 KB | | 0%
certifi-2020.12.5 | 141 KB | ########## | 100%
certifi-2020.12.5 | 141 KB | ########## | 100%
setuptools-52.0.0 | 726 KB | | 0%
setuptools-52.0.0 | 726 KB | ########## | 100%
setuptools-52.0.0 | 726 KB | ########## | 100%
conda-package-handli | 721 KB | | 0%
conda-package-handli | 721 KB | ########## | 100%
conda-package-handli | 721 KB | ########## | 100%
cryptography-3.4.7 | 643 KB | | 0%
cryptography-3.4.7 | 643 KB | ########## | 100%
cryptography-3.4.7 | 643 KB | ########## | 100%
pip-21.0.1 | 1.8 MB | | 0%
pip-21.0.1 | 1.8 MB | ########## | 100%
pip-21.0.1 | 1.8 MB | ########## | 100%
chardet-4.0.0 | 211 KB | | 0%
chardet-4.0.0 | 211 KB | ########## | 100%
chardet-4.0.0 | 211 KB | ########## | 100%
sqlite-3.35.4 | 761 KB | | 0%
sqlite-3.35.4 | 761 KB | ########## | 100%
sqlite-3.35.4 | 761 KB | ########## | 100%
cffi-1.14.5 | 224 KB | | 0%
cffi-1.14.5 | 224 KB | ########## | 100%
cffi-1.14.5 | 224 KB | ########## | 100%
wheel-0.36.2 | 33 KB | | 0%
wheel-0.36.2 | 33 KB | ########## | 100%
vs2015_runtime-14.27 | 1007 KB | | 0%
vs2015_runtime-14.27 | 1007 KB | ########## | 100%
vs2015_runtime-14.27 | 1007 KB | ########## | 100%
conda-4.10.1 | 2.9 MB | | 0%
conda-4.10.1 | 2.9 MB | ########## | 100%
conda-4.10.1 | 2.9 MB | ########## | 100%
tqdm-4.59.0 | 93 KB | | 0%
tqdm-4.59.0 | 93 KB | ########## | 100%
requests-2.25.1 | 52 KB | | 0%
requests-2.25.1 | 52 KB | ########## | 100%
pyopenssl-20.0.1 | 49 KB | | 0%
pyopenssl-20.0.1 | 49 KB | ########## | 100%
vc-14.2 | 8 KB | | 0%
vc-14.2 | 8 KB | ########## | 100%
idna-2.10 | 52 KB | | 0%
idna-2.10 | 52 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.12-\tmpdir\RTMPEE~1\Test\envs\r-reticulate
added / updated specs:
- numpy
- python=3.6
The following packages will be downloaded:
package | build
---------------------------|-----------------
certifi-2020.12.5 | py36ha15d459_1 144 KB conda-forge
intel-openmp-2021.2.0 | h57928b3_616 2.6 MB conda-forge
libblas-3.9.0 | 9_mkl 4.0 MB conda-forge
libcblas-3.9.0 | 9_mkl 4.0 MB conda-forge
liblapack-3.9.0 | 9_mkl 4.0 MB conda-forge
mkl-2021.2.0 | hb70f87d_389 183.8 MB conda-forge
numpy-1.19.5 | py36hd1b969e_1 4.9 MB conda-forge
pip-21.1.1 | pyhd8ed1ab_0 1.1 MB conda-forge
python-3.6.13 |h39d44d4_0_cpython 19.0 MB conda-forge
python_abi-3.6 | 1_cp36m 4 KB conda-forge
setuptools-49.6.0 | py36ha15d459_3 921 KB conda-forge
tbb-2021.2.0 | h2d74725_0 138 KB conda-forge
vc-14.2 | hb210afc_4 13 KB conda-forge
vs2015_runtime-14.28.29325 | h5e1d092_4 2.3 MB conda-forge
wheel-0.36.2 | pyhd3deb0d_0 31 KB conda-forge
wincertstore-0.2 |py36ha15d459_1006 15 KB conda-forge
------------------------------------------------------------
Total: 227.0 MB
The following NEW packages will be INSTALLED:
certifi conda-forge/win-64::certifi-2020.12.5-py36ha15d459_1
intel-openmp conda-forge/win-64::intel-openmp-2021.2.0-h57928b3_616
libblas conda-forge/win-64::libblas-3.9.0-9_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-9_mkl
liblapack conda-forge/win-64::liblapack-3.9.0-9_mkl
mkl conda-forge/win-64::mkl-2021.2.0-hb70f87d_389
numpy conda-forge/win-64::numpy-1.19.5-py36hd1b969e_1
pip conda-forge/noarch::pip-21.1.1-pyhd8ed1ab_0
python conda-forge/win-64::python-3.6.13-h39d44d4_0_cpython
python_abi conda-forge/win-64::python_abi-3.6-1_cp36m
setuptools conda-forge/win-64::setuptools-49.6.0-py36ha15d459_3
tbb conda-forge/win-64::tbb-2021.2.0-h2d74725_0
vc conda-forge/win-64::vc-14.2-hb210afc_4
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.28.29325-h5e1d092_4
wheel conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
wincertstore conda-forge/win-64::wincertstore-0.2-py36ha15d459_1006
Downloading and Extracting Packages
wincertstore-0.2 | 15 KB | | 0%
wincertstore-0.2 | 15 KB | ########## | 100%
wincertstore-0.2 | 15 KB | ########## | 100%
libcblas-3.9.0 | 4.0 MB | | 0%
libcblas-3.9.0 | 4.0 MB | 3 | 3%
libcblas-3.9.0 | 4.0 MB | ####4 | 44%
libcblas-3.9.0 | 4.0 MB | ########## | 100%
libcblas-3.9.0 | 4.0 MB | ########## | 100%
liblapack-3.9.0 | 4.0 MB | | 0%
liblapack-3.9.0 | 4.0 MB | #2 | 13%
liblapack-3.9.0 | 4.0 MB | #####6 | 56%
liblapack-3.9.0 | 4.0 MB | ########## | 100%
liblapack-3.9.0 | 4.0 MB | ########## | 100%
numpy-1.19.5 | 4.9 MB | | 0%
numpy-1.19.5 | 4.9 MB | ####5 | 46%
numpy-1.19.5 | 4.9 MB | ########## | 100%
numpy-1.19.5 | 4.9 MB | ########## | 100%
python-3.6.13 | 19.0 MB | | 0%
python-3.6.13 | 19.0 MB | # | 11%
python-3.6.13 | 19.0 MB | ####3 | 43%
python-3.6.13 | 19.0 MB | ########7 | 87%
python-3.6.13 | 19.0 MB | ########## | 100%
vs2015_runtime-14.28 | 2.3 MB | | 0%
vs2015_runtime-14.28 | 2.3 MB | ########3 | 84%
vs2015_runtime-14.28 | 2.3 MB | ########## | 100%
wheel-0.36.2 | 31 KB | | 0%
wheel-0.36.2 | 31 KB | ########## | 100%
wheel-0.36.2 | 31 KB | ########## | 100%
mkl-2021.2.0 | 183.8 MB | | 0%
mkl-2021.2.0 | 183.8 MB | 1 | 1%
mkl-2021.2.0 | 183.8 MB | 5 | 5%
mkl-2021.2.0 | 183.8 MB | 9 | 10%
mkl-2021.2.0 | 183.8 MB | #5 | 15%
mkl-2021.2.0 | 183.8 MB | ## | 21%
mkl-2021.2.0 | 183.8 MB | ##4 | 24%
mkl-2021.2.0 | 183.8 MB | ##9 | 29%
mkl-2021.2.0 | 183.8 MB | ###3 | 33%
mkl-2021.2.0 | 183.8 MB | ###7 | 38%
mkl-2021.2.0 | 183.8 MB | ####2 | 43%
mkl-2021.2.0 | 183.8 MB | ####7 | 47%
mkl-2021.2.0 | 183.8 MB | #####1 | 52%
mkl-2021.2.0 | 183.8 MB | #####6 | 56%
mkl-2021.2.0 | 183.8 MB | ###### | 60%
mkl-2021.2.0 | 183.8 MB | ######4 | 65%
mkl-2021.2.0 | 183.8 MB | ######8 | 69%
mkl-2021.2.0 | 183.8 MB | #######4 | 74%
mkl-2021.2.0 | 183.8 MB | #######8 | 78%
mkl-2021.2.0 | 183.8 MB | ########3 | 83%
mkl-2021.2.0 | 183.8 MB | ######### | 90%
mkl-2021.2.0 | 183.8 MB | #########5 | 95%
mkl-2021.2.0 | 183.8 MB | ########## | 100%
setuptools-49.6.0 | 921 KB | | 0%
setuptools-49.6.0 | 921 KB | ########## | 100%
setuptools-49.6.0 | 921 KB | ########## | 100%
certifi-2020.12.5 | 144 KB | | 0%
certifi-2020.12.5 | 144 KB | ########## | 100%
certifi-2020.12.5 | 144 KB | ########## | 100%
intel-openmp-2021.2. | 2.6 MB | | 0%
intel-openmp-2021.2. | 2.6 MB | #####9 | 60%
intel-openmp-2021.2. | 2.6 MB | ########## | 100%
intel-openmp-2021.2. | 2.6 MB | ########## | 100%
libblas-3.9.0 | 4.0 MB | | 0%
libblas-3.9.0 | 4.0 MB | ###8 | 39%
libblas-3.9.0 | 4.0 MB | ########## | 100%
libblas-3.9.0 | 4.0 MB | ########## | 100%
vc-14.2 | 13 KB | | 0%
vc-14.2 | 13 KB | ########## | 100%
tbb-2021.2.0 | 138 KB | | 0%
tbb-2021.2.0 | 138 KB | ########## | 100%
tbb-2021.2.0 | 138 KB | ########## | 100%
pip-21.1.1 | 1.1 MB | | 0%
pip-21.1.1 | 1.1 MB | ########## | 100%
pip-21.1.1 | 1.1 MB | ########## | 100%
python_abi-3.6 | 4 KB | | 0%
python_abi-3.6 | 4 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
# $ conda activate r-reticulate
#
# To deactivate an active environment, use
#
# $ conda deactivate
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 3 ]
>
> proc.time()
user system elapsed
2.09 1.43 257.26
|
|
Herper.Rcheck/examples_i386/Herper-Ex.timings
|
Herper.Rcheck/examples_x64/Herper-Ex.timings
|