| Back to Multiple platform build/check report for BioC 3.12 | 
  | 
This page was generated on 2021-05-06 12:31:14 -0400 (Thu, 06 May 2021).
| 
To the developers/maintainers of the FitHiC package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 607/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| FitHiC 1.16.0  (landing page) Ruyu Tan 
  | malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: FitHiC | 
| Version: 1.16.0 | 
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/FitHiC_1.16.0.tar.gz && rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FitHiC.buildbin-libdir FitHiC_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL FitHiC_1.16.0.zip && rm FitHiC_1.16.0.tar.gz FitHiC_1.16.0.zip | 
| StartedAt: 2021-05-05 16:47:14 -0400 (Wed, 05 May 2021) | 
| EndedAt: 2021-05-05 16:48:07 -0400 (Wed, 05 May 2021) | 
| EllapsedTime: 53.9 seconds | 
| RetCode: 0 | 
| Status: OK | 
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### Running command:
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###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/FitHiC_1.16.0.tar.gz && rm -rf FitHiC.buildbin-libdir && mkdir FitHiC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FitHiC.buildbin-libdir FitHiC_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL FitHiC_1.16.0.zip && rm FitHiC_1.16.0.tar.gz FitHiC_1.16.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 26.6M  100 26.6M    0     0  97.1M      0 --:--:-- --:--:-- --:--:-- 97.5M
install for i386
* installing *source* package 'FitHiC' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c FitHiC_init.c -o FitHiC_init.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c helper.cpp -o helper.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o FitHiC.dll tmp.def FitHiC_init.o RcppExports.o helper.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/FitHiC.buildbin-libdir/00LOCK-FitHiC/00new/FitHiC/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FitHiC'
    finding HTML links ... done
    FitHiC                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FitHiC' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c FitHiC_init.c -o FitHiC_init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c helper.cpp -o helper.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o FitHiC.dll tmp.def FitHiC_init.o RcppExports.o helper.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/FitHiC.buildbin-libdir/FitHiC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FitHiC' as FitHiC_1.16.0.zip
* DONE (FitHiC)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'FitHiC' successfully unpacked and MD5 sums checked