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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BayesSpace_1.0.0.tar.gz && rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesSpace.buildbin-libdir BayesSpace_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BayesSpace_1.0.0.zip && rm BayesSpace_1.0.0.tar.gz BayesSpace_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  717k  100  717k    0     0  29.9M      0 --:--:-- --:--:-- --:--:-- 31.8M

install for i386

* installing *source* package 'BayesSpace' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cluster.cpp -o cluster.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BayesSpace.dll tmp.def RcppExports.o cluster.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BayesSpace.buildbin-libdir/00LOCK-BayesSpace/00new/BayesSpace/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BayesSpace'
    finding HTML links ... done
    BayesSpace                              html  
    Mode                                    html  
    cluster                                 html  
    clusterPlot                             html  
    deconvolve                              html  
    dot-adjust_hex_centers                  html  
    dot-bsData                              html  
    dot-clean_chain                         html  
    dot-compute_interspot_distances         html  
    dot-find_neighbors                      html  
    dot-flatten_matrix_list                 html  
    dot-infer_param_dims                    html  
    dot-init_cluster                        html  
    dot-make_hex_spots                      html  
    dot-make_index_names                    html  
    dot-make_spot_vertices                  html  
    dot-make_square_spots                   html  
    dot-make_subspot_coldata                html  
    dot-make_subspot_offsets                html  
    dot-make_triangle_subspots              html  
    dot-make_vertices                       html  
    dot-prepare_inputs                      html  
    dot-read_chain                          html  
    dot-select_spot_positions               html  
    dot-select_subspot_positions            html  
    enhanceFeatures                         html  
    exampleSCE                              html  
    featurePlot                             html  
    find_neighbors                          html  
    getRDS                                  html  
    mcmcChain                               html  
    qTune                                   html  
    readVisium                              html  
    spatialCluster                          html  
    spatialEnhance                          html  
    spatialPlot                             html  
    spatialPreprocess                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BayesSpace' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cluster.cpp -o cluster.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BayesSpace.dll tmp.def RcppExports.o cluster.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BayesSpace.buildbin-libdir/BayesSpace/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BayesSpace' as BayesSpace_1.0.0.zip
* DONE (BayesSpace)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BayesSpace' successfully unpacked and MD5 sums checked