Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for BatchQC on tokay1

This page was generated on 2021-05-06 12:29:59 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the BatchQC package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 124/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BatchQC 1.18.0  (landing page)
Solaiappan Manimaran
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/BatchQC
Branch: RELEASE_3_12
Last Commit: 448a06a
Last Changed Date: 2020-10-27 11:13:48 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: BatchQC
Version: 1.18.0
Command: rm -rf BatchQC.buildbin-libdir && mkdir BatchQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BatchQC.buildbin-libdir BatchQC_1.18.0.tar.gz
StartedAt: 2021-05-06 08:30:02 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 08:30:48 -0400 (Thu, 06 May 2021)
EllapsedTime: 46.3 seconds
RetCode: 0
Status:   OK   
PackageFile: BatchQC_1.18.0.zip
PackageFileSize: 1.664 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BatchQC.buildbin-libdir && mkdir BatchQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BatchQC.buildbin-libdir BatchQC_1.18.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'BatchQC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** help
*** installing help indices
  converting help for package 'BatchQC'
    finding HTML links ... done
    BatchQCout-class                        html  
    batchQC                                 html  
    batchQC_analyze                         html  
    batchQC_condition_adjusted              html  
    batchQC_filter_genes                    html  
    batchQC_fsva_adjusted                   html  
    batchQC_num.sv                          html  
    batchQC_shapeVariation                  html  
    batchQC_sva                             html  
    batchQC_svregress_adjusted              html  
    batchqc_circosplot                      html  
    batchqc_correlation                     html  
    batchqc_corscatter                      html  
    batchqc_explained_variation             html  
    batchqc_heatmap                         html  
    batchqc_pc_explained_variation          html  
    batchqc_pca                             html  
    batchqc_pca_svd                         html  
    batchtest                               html  
    combatPlot                              html  
    example_batchqc_data                    html  
    getShinyInput                           html  
    getShinyInputCombat                     html  
    getShinyInputOrig                       html  
    getShinyInputSVA                        html  
    getShinyInputSVAf                       html  
    getShinyInputSVAr                       html  
    gnormalize                              html  
    lmFitC                                  html  
    log2CPM                                 html  
    makeSVD                                 html  
    pcRes                                   html  
    plotPC                                  html  
    plot_genewise_moments                   html  
    plot_samplewise_moments                 html  
    protein_example_data                    html  
    rnaseq_sim                              html  
    setShinyInput                           html  
    setShinyInputCombat                     html  
    setShinyInputOrig                       html  
    setShinyInputSVA                        html  
    setShinyInputSVAf                       html  
    setShinyInputSVAr                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package can be loaded from final location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BatchQC' ...
** testing if installed package can be loaded
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
* MD5 sums
packaged installation of 'BatchQC' as BatchQC_1.18.0.zip
* DONE (BatchQC)