| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:59 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE twoddpcr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1850/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| twoddpcr 1.12.0 Anthony Chiu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: twoddpcr |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings twoddpcr_1.12.0.tar.gz |
| StartedAt: 2020-10-17 06:19:02 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 06:21:48 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 165.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings twoddpcr_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/twoddpcr.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
knnClassify 9.787 0.020 9.823
ggplot.well 9.108 0.108 9.485
flatPlot 6.551 0.056 6.707
gridClassify 6.400 0.047 6.569
dropletPlot 5.571 0.059 5.848
sdRain 5.259 0.004 5.330
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 156 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
11.104 0.168 11.521
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.794 | 0.024 | 0.820 | |
| basicsSummary | 0.011 | 0.000 | 0.010 | |
| castSummary | 0.028 | 0.004 | 0.031 | |
| classCov | 0.088 | 0.008 | 0.097 | |
| classMeans | 0.089 | 0.000 | 0.089 | |
| classStats | 0.106 | 0.000 | 0.107 | |
| clusterCentres | 1.565 | 0.012 | 1.600 | |
| copiesSummary | 0.008 | 0.000 | 0.008 | |
| ddpcrPlate-class | 0.657 | 0.000 | 0.663 | |
| ddpcrWell-class | 0.055 | 0.000 | 0.056 | |
| ddpcrWell-methods | 0.681 | 0.000 | 0.704 | |
| dropletPlot | 5.571 | 0.059 | 5.848 | |
| exportTable | 0.219 | 0.020 | 0.246 | |
| extractPlateName | 0.001 | 0.000 | 0.001 | |
| extractWellNames | 0.000 | 0.000 | 0.001 | |
| facetPlot | 2.491 | 0.072 | 2.565 | |
| flatPlot | 6.551 | 0.056 | 6.707 | |
| fullCopiesSummary | 0.009 | 0.000 | 0.009 | |
| fullCountsSummary | 0.043 | 0.000 | 0.043 | |
| ggplot.well | 9.108 | 0.108 | 9.485 | |
| gridClassify | 6.400 | 0.047 | 6.569 | |
| heatPlot | 2.168 | 0.004 | 2.196 | |
| kmeansClassify | 1.946 | 0.000 | 1.969 | |
| knnClassify | 9.787 | 0.020 | 9.823 | |
| mahalanobisRain | 0.917 | 0.000 | 0.918 | |
| mutantCopiesSummary | 0.004 | 0.000 | 0.004 | |
| numDroplets | 0.468 | 0.000 | 0.469 | |
| parseClusterCounts | 0.013 | 0.000 | 0.013 | |
| plateClassification | 1.499 | 0.008 | 1.508 | |
| plateClassificationMethod | 0.831 | 0.000 | 0.831 | |
| plateSummary | 3.895 | 0.001 | 3.895 | |
| positiveCounts | 0.037 | 0.000 | 0.037 | |
| readCSVDataFrame | 0.019 | 0.000 | 0.019 | |
| relabelClasses | 0.07 | 0.00 | 0.07 | |
| removeDropletClasses | 1.106 | 0.000 | 1.106 | |
| renormalisePlate | 4.815 | 0.000 | 4.840 | |
| sdRain | 5.259 | 0.004 | 5.330 | |
| setChannelNames | 0.002 | 0.000 | 0.002 | |
| setDropletVolume | 0.001 | 0.000 | 0.000 | |
| sortDataFrame | 0.001 | 0.002 | 0.003 | |
| sortWells | 0.629 | 0.000 | 0.637 | |
| thresholdClassify | 3.181 | 0.004 | 3.218 | |
| wellClassification | 0.070 | 0.000 | 0.069 | |
| wellClassificationMethod | 0.049 | 0.000 | 0.050 | |
| whiteTheme | 1.758 | 0.016 | 1.833 | |
| wildTypeCopiesSummary | 0.007 | 0.000 | 0.007 | |