| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:55:47 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE slinky PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1683/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| slinky 1.6.0 Eric J. Kort
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: slinky |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:slinky.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings slinky_1.6.0.tar.gz |
| StartedAt: 2020-10-17 05:37:49 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 05:42:02 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 253.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: slinky.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:slinky.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings slinky_1.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/slinky.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘slinky/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘slinky’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘slinky’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rzs 10.166 0.125 11.029
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
slinky.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL slinky ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘slinky’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slinky)
slinky.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(slinky)
>
> test_check("slinky")
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 46 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
77.282 3.418 88.926
slinky.Rcheck/slinky-Ex.timings
| name | user | system | elapsed | |
| Slinky-class | 0.662 | 0.036 | 1.099 | |
| closeAll | 0.041 | 0.000 | 0.071 | |
| clue | 0.200 | 0.000 | 0.409 | |
| clueCount | 0.046 | 0.000 | 0.134 | |
| clueInstances | 0.180 | 0.000 | 0.386 | |
| clueVehicle | 0.306 | 0.000 | 1.799 | |
| coerce | 0.157 | 0.008 | 0.193 | |
| colnames | 0.059 | 0.000 | 0.087 | |
| controls | 0.483 | 0.000 | 1.219 | |
| diffexp | 3.192 | 0.481 | 3.699 | |
| download | 0.000 | 0.000 | 0.001 | |
| get_metadata | 0.037 | 0.000 | 0.065 | |
| loadL1K | 0.546 | 0.015 | 1.302 | |
| metadata | 0.034 | 0.000 | 0.062 | |
| nrow | 0.027 | 0.000 | 0.054 | |
| readGCTX | 0.066 | 0.008 | 0.101 | |
| rownames | 0.033 | 0.000 | 0.060 | |
| rzs | 10.166 | 0.125 | 11.029 | |
| subset | 0.085 | 0.000 | 0.113 | |