Erik Fasterius
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/seqCAT |
| Branch: RELEASE_3_11 |
| Last Commit: 651738c |
| Last Changed Date: 2020-04-27 15:10:31 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:47 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE seqCAT PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1627/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| seqCAT 1.10.0 Erik Fasterius
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: seqCAT |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqCAT_1.10.0.tar.gz && rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCAT.buildbin-libdir seqCAT_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqCAT_1.10.0.zip && rm seqCAT_1.10.0.tar.gz seqCAT_1.10.0.zip |
| StartedAt: 2020-10-16 19:14:37 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:16:14 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 97.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqCAT_1.10.0.tar.gz && rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCAT.buildbin-libdir seqCAT_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqCAT_1.10.0.zip && rm seqCAT_1.10.0.tar.gz seqCAT_1.10.0.zip
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install for i386
* installing *source* package 'seqCAT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'seqCAT'
finding HTML links ... done
calculate_similarity html
compare_many html
compare_profiles html
create_profile html
create_profiles html
filter_duplicates html
filter_variants html
list_cosmic html
list_variants html
plot_heatmap html
plot_impacts html
plot_variant_list html
read_cosmic html
read_profile html
read_profiles html
seqCAT html
test_comparison html
test_profile_1 html
test_profile_2 html
test_profile_3 html
test_similarities html
test_variant_list html
write_profile html
write_profiles html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'seqCAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqCAT' as seqCAT_1.10.0.zip
* DONE (seqCAT)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'seqCAT' successfully unpacked and MD5 sums checked