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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scfind_1.10.0.tar.gz && rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scfind.buildbin-libdir scfind_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scfind_1.10.0.zip && rm scfind_1.10.0.tar.gz scfind_1.10.0.zip
###
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install for i386

* installing *source* package 'scfind' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c eliasFano.cpp -o eliasFano.o
eliasFano.cpp: In function 'std::vector<bool> int2bin(int)':
eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
     int rem;
         ^~~
eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)':
eliasFano.cpp:83:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'unsigned int'} [-Wsign-compare]
             for (int k = 0; k < h.size(); k++) {
                             ~~^~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/scfind.buildbin-libdir/00LOCK-scfind/00new/scfind/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scfind'
    finding HTML links ... done
    ann                                     html  
    buildCellIndex                          html  
    buildCellTypeIndex                      html  
    findCell                                html  
    findCellType                            html  
    yan                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'scfind' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'scfind' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scfind' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c eliasFano.cpp -o eliasFano.o
eliasFano.cpp: In function 'std::vector<bool> int2bin(int)':
eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
     int rem;
         ^~~
eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)':
eliasFano.cpp:83:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<bool>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
             for (int k = 0; k < h.size(); k++) {
                             ~~^~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/scfind.buildbin-libdir/scfind/libs/x64
** testing if installed package can be loaded
Warning: Package 'scfind' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'scfind' as scfind_1.10.0.zip
* DONE (scfind)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'scfind' successfully unpacked and MD5 sums checked