Carles Hernandez-Ferrer
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/rexposome |
| Branch: RELEASE_3_11 |
| Last Commit: ff660bc |
| Last Changed Date: 2020-04-27 15:09:11 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:36 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE rexposome PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1469/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rexposome 1.10.0 Carles Hernandez-Ferrer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: rexposome |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rexposome.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings rexposome_1.10.0.tar.gz |
| StartedAt: 2020-10-17 07:27:04 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 07:31:52 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 288.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: rexposome.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rexposome.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings rexposome_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/rexposome.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rexposome/DESCRIPTION' ... OK
* this is package 'rexposome' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rexposome' can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 2.8Mb
extdata 2.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
imputeLOD: multiple local function definitions for 'faux' with
different formal arguments
plotHistogram,ExposomeSet: no visible binding for global variable
'..density..'
Undefined global functions or variables:
..density..
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
clustering-methods 27.21 0.02 27.24
plotCorrelation-methods 12.30 0.08 12.70
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
clustering-methods 26.54 0.05 26.57
plotCorrelation-methods 12.35 0.06 12.40
correlation-methods 7.19 0.00 7.19
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.11-bioc/meat/rexposome.Rcheck/00check.log'
for details.
rexposome.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/rexposome_1.10.0.tar.gz && rm -rf rexposome.buildbin-libdir && mkdir rexposome.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rexposome.buildbin-libdir rexposome_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL rexposome_1.10.0.zip && rm rexposome_1.10.0.tar.gz rexposome_1.10.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
29 5213k 29 1536k 0 0 7076k 0 --:--:-- --:--:-- --:--:-- 7245k
100 5213k 100 5213k 0 0 14.7M 0 --:--:-- --:--:-- --:--:-- 15.0M
install for i386
* installing *source* package 'rexposome' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rexposome'
finding HTML links ... done
ExWAS-class html
ExposomeClust-class html
ExposomeCorr-class html
finding level-2 HTML links ... done
ExposomePCA-class html
ExposomeSet-class html
classification-methods html
clustering-methods html
correlation-methods html
ex_imp html
expo html
expo_c html
expos-methods html
exposureNames-methods html
extract-methods html
exwas-methods html
familyNames-methods html
highAndLow-methods html
ilod-methods html
imExposomeSet-class html
imputation-methods html
imputeLOD html
loadExposome html
loadImputed html
mExWAS-class html
me html
mexwas-methods html
ndim-methods html
normalityTest-methods html
pca-methods html
phenotypeNames-methods html
plot3PCA-methods html
plotClassification-methods html
plotCorrelation-methods html
plotEXP-methods html
plotEffect-methods html
plotExwas-methods html
plotFamily-methods html
plotHistogram-methods html
plotLOD-methods html
plotMissings-methods html
plotPCA-methods html
plotPHE-methods html
plotVolcano-methods html
readExposome html
rexposome html
standardize-methods html
tableLOD-methods html
tableMissings-methods html
tef-methods html
toES html
trans-methods html
volcano_plot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rexposome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rexposome' as rexposome_1.10.0.zip
* DONE (rexposome)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'rexposome' successfully unpacked and MD5 sums checked
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rexposome.Rcheck/examples_i386/rexposome-Ex.timings
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rexposome.Rcheck/examples_x64/rexposome-Ex.timings
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