Frederic Commo
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/rCGH |
| Branch: RELEASE_3_11 |
| Last Commit: a7cd291 |
| Last Changed Date: 2020-04-27 14:50:02 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:34 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE rCGH PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1432/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rCGH 1.18.0 Frederic Commo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: rCGH |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/rCGH_1.18.0.tar.gz && rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL rCGH_1.18.0.zip && rm rCGH_1.18.0.tar.gz rCGH_1.18.0.zip |
| StartedAt: 2020-10-16 19:27:04 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:28:43 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 99.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/rCGH_1.18.0.tar.gz && rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL rCGH_1.18.0.zip && rm rCGH_1.18.0.tar.gz rCGH_1.18.0.zip
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install for i386
* installing *source* package 'rCGH' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rCGH'
finding HTML links ... done
AllAccessors html
EMnormalize html
adjustSignal html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpu0LEqP/R.INSTALL29b07f01715/rCGH/man/adjustSignal.Rd:79: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
agilentDB html
byGeneTable html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpu0LEqP/R.INSTALL29b07f01715/rCGH/man/byGeneTable.Rd:36: file link 'select' in package 'AnnotationDbi' does not exist and so has been treated as a topic
hg18 html
hg19 html
hg38 html
multiplot html
plotDensity html
plotLOH html
plotProfile html
rCGH-Agilent-class html
rCGH-SNP6-class html
rCGH-class html
rCGH-cytoScan-class html
rCGH-generic-class html
rCGH-oncoScan-class html
rCGH-package html
readAffyCytoScan html
readAffyOncoScan html
readAffySNP6 html
readAgilent html
readGeneric html
recenter html
segmentCGH html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpu0LEqP/R.INSTALL29b07f01715/rCGH/man/segmentCGH.Rd:37: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpu0LEqP/R.INSTALL29b07f01715/rCGH/man/segmentCGH.Rd:69: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
setInfo html
show-methods html
view html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpu0LEqP/R.INSTALL29b07f01715/rCGH/man/view.Rd:9: file link 'shiny' in package 'shiny' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rCGH' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rCGH' as rCGH_1.18.0.zip
* DONE (rCGH)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'rCGH' successfully unpacked and MD5 sums checked