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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pdInfoBuilder_1.52.0.tar.gz && rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pdInfoBuilder_1.52.0.zip && rm pdInfoBuilder_1.52.0.tar.gz pdInfoBuilder_1.52.0.zip
###
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100  359k  100  359k    0     0  4940k      0 --:--:-- --:--:-- --:--:-- 5450k

install for i386

* installing *source* package 'pdInfoBuilder' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pdInfoBuilder.c -o pdInfoBuilder.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/pdInfoBuilder.buildbin-libdir/00LOCK-pdInfoBuilder/00new/pdInfoBuilder/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
** help
*** installing help indices
  converting help for package 'pdInfoBuilder'
    finding HTML links ... done
    AffyClariomSPDInfoPkgSeed-class         html  
    AffyExpressionPDInfoPkgSeed-class       html  
    AffySNPCNVPDInfoPkgSeed-class           html  
    AffySNPCNVPDInfoPkgSeed2-class          html  
    AffySNPPDInfoPkgSeed-class              html  
    AffySNPPDInfoPkgSeed2-class             html  
    AffySTPDInfoPkgSeed-class               html  
    AffyTilingPDInfoPkgSeed-class           html  
    GenericArrayFunctions                   html  
    NgsExpressionPDInfoPkgSeed-class        html  
    NgsTilingPDInfoPkgSeed-class            html  
    NimbleGenPDInfoPkgSeed-class            html  
    chipName                                html  
    getGeometry                             html  
    makePdInfoPackage                       html  
** building package indices
** installing vignettes
   'BuildingPDInfoPkgs.Rnw' 
   'howto-AffymetrixMapping.Rnw' 
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pdInfoBuilder' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pdInfoBuilder.c -o pdInfoBuilder.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x64
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
* MD5 sums
packaged installation of 'pdInfoBuilder' as pdInfoBuilder_1.52.0.zip
* DONE (pdInfoBuilder)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'pdInfoBuilder' successfully unpacked and MD5 sums checked