Steve Pederson
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/ngsReports |
| Branch: RELEASE_3_11 |
| Last Commit: 530ae1b |
| Last Changed Date: 2020-06-08 12:27:17 -0400 (Mon, 08 Jun 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:16 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE ngsReports PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1195/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ngsReports 1.4.2 Steve Pederson
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: ngsReports |
| Version: 1.4.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ngsReports_1.4.2.tar.gz && rm -rf ngsReports.buildbin-libdir && mkdir ngsReports.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ngsReports.buildbin-libdir ngsReports_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ngsReports_1.4.2.zip && rm ngsReports_1.4.2.tar.gz ngsReports_1.4.2.zip |
| StartedAt: 2020-10-16 18:36:43 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:38:53 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 130.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ngsReports_1.4.2.tar.gz && rm -rf ngsReports.buildbin-libdir && mkdir ngsReports.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ngsReports.buildbin-libdir ngsReports_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ngsReports_1.4.2.zip && rm ngsReports_1.4.2.tar.gz ngsReports_1.4.2.zip
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install for i386
* installing *source* package 'ngsReports' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ngsReports'
finding HTML links ... done
FastqcData html
FastqcDataList html
PwfCols-class html
TheoreticalGC-class html
dot-FastqcFile-class html
dot-addPercent html
dot-emptyPlot html
dot-getToolName html
dot-hidePWFRects html
dot-isValidAdapterRemovalLog html
dot-isValidBowtieLog html
dot-isValidBuscoLog html
dot-isValidCutadaptLog html
dot-isValidDuplicationMetricsLog html
dot-isValidFeatureCountsLog html
dot-isValidFlagstatLog html
dot-isValidHisat2Log html
dot-isValidQuastLog html
dot-isValidStarLog html
dot-isValidTrimmomaticLog html
dot-makeDendro html
dot-makeLabels html
dot-makeSidebar html
dot-parseAdapterRemovalLogs html
dot-parseBowtieLogs html
dot-parseBuscoLogs html
dot-parseCutadaptLogs html
dot-parseDuplicationMetricsLogs html
dot-parseFeatureCountsLogs html
dot-parseFlagstatLogs html
dot-parseHisat2Logs html
dot-parseQuastLogs html
dot-parseStarLogs html
dot-parseTrimmomaticLogs html
dot-renderDendro html
dot-scale_fill_pwf html
dot-splitByTab html
estGcDistn html
extract-methods html
fqName-methods html
fqcVersion html
gcAvail html
gcTheoretical html
getColours-methods html
getGC html
getModule html
getSummary html
importNgsLogs html
isCompressed html
mData html
maxAdapterContent html
overRep2Fasta-methods html
path html
plotAdapterContent-methods html
plotAlignmentSummary html
plotAssemblyStats html
plotBaseQuals-methods html
plotDupLevels-methods html
plotFastqcPCA-methods html
plotGcContent-methods html
plotKmers-methods html
plotNContent-methods html
plotOverrep-methods html
plotReadTotals-methods html
plotSeqContent-methods html
plotSeqLengthDistn-methods html
plotSeqQuals-methods html
plotSummary-methods html
pwf html
readTotals html
runFastQC-methods html
writeHtmlReport html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ngsReports' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ngsReports' as ngsReports_1.4.2.zip
* DONE (ngsReports)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ngsReports' successfully unpacked and MD5 sums checked