Cole Trapnell
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/monocle |
| Branch: RELEASE_3_11 |
| Last Commit: a4d0e47 |
| Last Changed Date: 2020-04-27 14:40:37 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:11 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE monocle PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1119/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| monocle 2.16.0 Cole Trapnell
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: monocle |
| Version: 2.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/monocle_2.16.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL monocle_2.16.0.zip && rm monocle_2.16.0.tar.gz monocle_2.16.0.zip |
| StartedAt: 2020-10-16 18:11:10 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:13:20 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 130.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/monocle_2.16.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL monocle_2.16.0.zip && rm monocle_2.16.0.tar.gz monocle_2.16.0.zip
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install for i386
* installing *source* package 'monocle' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c clustering.cpp -o clustering.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/monocle.buildbin-libdir/00LOCK-monocle/00new/monocle/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'monocle'
finding HTML links ... done
BEAM html
CellDataSet-methods html
CellDataSet html
CellType html
CellTypeHierarchy html
addCellType html
branchTest html
buildBranchCellDataSet html
calABCs html
calILRs html
calibrate_per_cell_total_proposal html
cellPairwiseDistances-set html
cellPairwiseDistances html
clusterCells html
finding level-2 HTML links ... done
clusterGenes html
compareModels html
detectBifurcationPoint html
detectGenes html
diff_test_helper html
differentialGeneTest html
dispersionTable html
estimateDispersionsForCellDataSet html
estimateSizeFactorsForMatrix html
estimate_t html
exportCDS html
extract_good_branched_ordering html
fitModel html
fit_model_helper html
genSmoothCurveResiduals html
genSmoothCurves html
get_classic_muscle_markers html
importCDS html
load_HSMM html
load_HSMM_markers html
load_lung html
markerDiffTable html
mcesApply html
minSpanningTree-set html
minSpanningTree html
newCellDataSet html
newCellTypeHierarchy html
orderCells html
order_p_node html
package-deprecated html
plot_cell_clusters html
plot_cell_trajectory html
plot_clusters html
plot_coexpression_matrix html
plot_complex_cell_trajectory html
plot_genes_branched_heatmap html
plot_genes_branched_pseudotime html
plot_genes_in_pseudotime html
plot_genes_jitter html
plot_genes_positive_cells html
plot_genes_violin html
plot_multiple_branches_heatmap html
plot_multiple_branches_pseudotime html
plot_ordering_genes html
plot_pc_variance_explained html
plot_pseudotime_heatmap html
plot_rho_delta html
pq_helper html
reduceDimension html
reducedDimA-set html
reducedDimA html
reducedDimK-set html
reducedDimK html
reducedDimS-set html
reducedDimS html
reducedDimW-set html
reducedDimW html
relative2abs html
residualMatrix html
responseMatrix html
selectTopMarkers html
setOrderingFilter html
spike_df html
vstExprs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'monocle' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c clustering.cpp -o clustering.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/monocle.buildbin-libdir/monocle/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'monocle' as monocle_2.16.0.zip
* DONE (monocle)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'monocle' successfully unpacked and MD5 sums checked