Sean Davis
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/methylumi |
| Branch: RELEASE_3_11 |
| Last Commit: 8afacb9 |
| Last Changed Date: 2020-04-27 14:19:25 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:05 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE methylumi PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1066/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methylumi 2.34.0 Sean Davis
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: methylumi |
| Version: 2.34.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methylumi_2.34.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methylumi_2.34.0.zip && rm methylumi_2.34.0.tar.gz methylumi_2.34.0.zip |
| StartedAt: 2020-10-16 19:10:48 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:12:46 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 117.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methylumi_2.34.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methylumi_2.34.0.zip && rm methylumi_2.34.0.tar.gz methylumi_2.34.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 5614k 100 5614k 0 0 30.9M 0 --:--:-- --:--:-- --:--:-- 32.0M
install for i386
* installing *source* package 'methylumi' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'methylumi'
finding HTML links ... done
CpGs html
MethyLumi-class html
finding level-2 HTML links ... done
MethyLumiM-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:41: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:41: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:53: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:54: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:55: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:56: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:57: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:58: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEDGnmz/R.INSTALL2a1c34ca726a/methylumi/man/MethyLumiM-class.Rd:70: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
MethyLumiQC-class html
MethyLumiSet-class html
estimateM html
extractBarcodeAndPosition html
featureFilter html
generics html
getAssayDataNameSubstitutions html
methylData-class html
methylumIDAT html
methylumi-package html
methylumiGenerics html
methylumiR html
mldat html
normalizeMethyLumiSet html
plotSampleIntensities html
qcplot html
stripBeadExtras html
varFilter html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'methylumi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylumi' as methylumi_2.34.0.zip
* DONE (methylumi)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'methylumi' successfully unpacked and MD5 sums checked