intansv 1.27.0
Wen Yao
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/intansv |
| Branch: master |
| Last Commit: d5bf0f9 |
| Last Changed Date: 2019-10-29 13:36:53 -0500 (Tue, 29 Oct 2019) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data intansv
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* checking for file ‘intansv/DESCRIPTION’ ... OK
* preparing ‘intansv’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘intansvOverview.Rnw’ using Sweave
Loading required package: plyr
Loading required package: ggbio
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames,
sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Loading required package: ggplot2
Registered S3 method overwritten by 'GGally':
method from
+.gg ggplot2
Need specific help about ggbio? try mailing
the maintainer or visit http://tengfei.github.com/ggbio/
Attaching package: 'ggbio'
The following objects are masked from 'package:ggplot2':
geom_bar, geom_rect, geom_segment, ggsave, stat_bin,
stat_identity, xlim
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:plyr':
rename
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:plyr':
desc
Loading required package: GenomeInfoDb
Error: processing vignette 'intansvOverview.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'intansvOverview.tex' failed.
LaTeX errors:
! Undefined control sequence.
\UseRawInputEncoding ...tencodingname \@undefined
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l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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<to be read again>
\let
l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
! Missing \endcsname inserted.
<to be read again>
\let
l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
! Missing \endcsname inserted.
<to be read again>
\let
l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
! Missing \endcsname inserted.
<to be read again>
\let
l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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\let
l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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\let
l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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l.51 reliable results \citep{Drosophila}
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l.51 reliable results \citep{Drosophila}
. The \intansv{} package is designed...
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l.51 reliable results \citep{Drosophila}
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! Package inputenc Error: Invalid UTF-8 byte 168.
See the inputenc package documentation for explanation.
Type H <return> for immediate help.
...
! Package inputenc Error: Invalid UTF-8 byte 185.
See the inputenc package documentation for explanation.
Type H <return> for immediate help.
...
! Undefined control sequence.
\UseRawInputEncoding ...tencodingname \@undefined
--- failed re-building 'intansvOverview.Rnw'
SUMMARY: processing the following file failed:
'intansvOverview.Rnw'
Error: Vignette re-building failed.
Execution halted