Vojtěch Kulvait
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/blima |
| Branch: RELEASE_3_11 |
| Last Commit: f8ad491 |
| Last Changed Date: 2020-04-27 14:40:34 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:10 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE blima PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 193/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| blima 1.22.0 Vojtěch Kulvait
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: blima |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/blima_1.22.0.tar.gz && rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=blima.buildbin-libdir blima_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL blima_1.22.0.zip && rm blima_1.22.0.tar.gz blima_1.22.0.zip |
| StartedAt: 2020-10-16 18:06:53 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:08:00 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 66.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/blima_1.22.0.tar.gz && rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=blima.buildbin-libdir blima_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL blima_1.22.0.zip && rm blima_1.22.0.tar.gz blima_1.22.0.zip
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install for i386
* installing *source* package 'blima' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interpolateSortedVector.cpp -o interpolateSortedVector.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/blima.buildbin-libdir/00LOCK-blima/00new/blima/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'blima'
finding HTML links ... done
aggregateAndPreprocess html
bacgroundCorrect html
bacgroundCorrectSingleArray html
backgroundChannelSubtract html
backgroundChannelSubtractSingleArray html
blima-package html
channelExistsIntegrityWithLogicalVectorList
html
checkIntegrity html
checkIntegrityLogical html
checkIntegrityOfListOfBeadLevelDataObjects
html
checkIntegrityOfSingleBeadLevelDataObject
html
chipArrayStatistics html
createSummarizedMatrix html
doAction html
doProbeTTests html
doTTests html
filterBg html
getNextVector html
initMeanDistribution html
insertColumn html
interpolateSortedVector html
interpolateSortedVectorRcpp_ html
log2TransformPositive html
meanDistribution html
nonParametricEstimator html
nonPositiveCorrect html
nonPositiveCorrectSingleArray html
numberOfDistributionElements html
performXieCorrection html
plotBackgroundImageAfterCorrection html
plotBackgroundImageBeforeCorrection html
quantileNormalize html
readToVector html
selectedChannelTransform html
selectedChannelTransformSingleArray html
singleArrayNormalize html
singleChannelExistsIntegrityWithLogicalVector
html
singleCheckIntegrityLogicalVector html
singleNumberOfDistributionElements html
updateMeanDistribution html
varianceBeadStabilise html
varianceBeadStabiliseSingleArray html
vstFromLumi html
writeBackgroundImages html
xieBacgroundCorrect html
xieBacgroundCorrectSingleArray html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'blima' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interpolateSortedVector.cpp -o interpolateSortedVector.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/blima.buildbin-libdir/blima/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'blima' as blima_1.22.0.zip
* DONE (blima)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'blima' successfully unpacked and MD5 sums checked