| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:52 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SSPA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1735/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SSPA 2.28.0 Maarten van Iterson
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
| Package: SSPA |
| Version: 2.28.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SSPA_2.28.0.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SSPA_2.28.0.zip && rm SSPA_2.28.0.tar.gz SSPA_2.28.0.zip |
| StartedAt: 2020-10-16 17:19:29 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:20:31 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 62.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SSPA_2.28.0.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SSPA_2.28.0.zip && rm SSPA_2.28.0.tar.gz SSPA_2.28.0.zip
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install for i386
* installing *source* package 'SSPA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SSPA_init.c -o SSPA_init.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c massdistc.c -o massdistc.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nncgc.c -o nncgc.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def SSPA_init.o massdistc.o nncgc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SSPA.buildbin-libdir/00LOCK-SSPA/00new/SSPA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SSPA'
finding HTML links ... done
Nutrigenomics html
cornerLcurve html
cornerScurve html
dbitri html
deconvolution html
deepSAGE html
defineEffectSizeRange html
findroot html
midpoint html
nncg html
pbitri html
picardplot html
pilotData html
predictpower html
qbitri html
rbitri html
regularization html
sampleSize html
show-methods html
simdat html
simpson html
standardform html
tikhonov html
trapezoidal html
trimbin html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SSPA' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SSPA_init.c -o SSPA_init.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c massdistc.c -o massdistc.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nncgc.c -o nncgc.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def SSPA_init.o massdistc.o nncgc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SSPA' as SSPA_2.28.0.zip
* DONE (SSPA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SSPA' successfully unpacked and MD5 sums checked