Christian Arnold
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SNPhood |
| Branch: RELEASE_3_11 |
| Last Commit: 09fd735 |
| Last Changed Date: 2020-04-27 14:52:21 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:50 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SNPhood PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1693/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SNPhood 1.18.0 Christian Arnold
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SNPhood |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SNPhood_1.18.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.18.0.zip && rm SNPhood_1.18.0.tar.gz SNPhood_1.18.0.zip |
| StartedAt: 2020-10-16 19:12:21 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:14:14 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 113.4 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SNPhood_1.18.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.18.0.zip && rm SNPhood_1.18.0.tar.gz SNPhood_1.18.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3963k 100 3963k 0 0 36.0M 0 --:--:-- --:--:-- --:--:-- 38.3M
install for i386
* installing *source* package 'SNPhood' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SNPhood'
finding HTML links ... done
SNPhood-class html
SNPhood html
SNPhood.o html
analyzeSNPhood html
finding level-2 HTML links ... done
annotation-methods html
annotationBins html
annotationBins2 html
annotationDatasets html
annotationReadGroups html
annotationRegions html
associateGenotypes html
bins-methods html
changeObjectIntegrityChecking html
collectFiles html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpoNOO4h/R.INSTALL2fc013147bf4/SNPhood/man/collectFiles.Rd:46: file link 'path' in package 'Rsamtools' does not exist and so has been treated as a topic
convertToAllelicFractions html
counts-method html
datasets-methods html
deleteDatasets html
deleteReadGroups html
deleteRegions html
enrichment-methods html
getDefaultParameterList html
mergeReadGroups html
parameters-methods html
plotAllelicBiasResults html
plotAllelicBiasResultsOverview html
plotAndCalculateCorrelationDatasets html
plotAndCalculateWeakAndStrongGenotype html
plotAndClusterMatrix html
plotAndSummarizeAllelicBiasTest html
plotBinCounts html
plotClusterAverage html
plotFDRResults html
plotGenotypesPerCluster html
plotGenotypesPerSNP html
plotRegionCounts html
readGroups-methods html
regions-methods html
renameBins html
renameDatasets html
renameReadGroups html
renameRegions html
results html
testForAllelicBiases html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SNPhood' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPhood' as SNPhood_1.18.0.zip
* DONE (SNPhood)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SNPhood' successfully unpacked and MD5 sums checked