Konrad Zych
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SIAMCAT |
| Branch: RELEASE_3_11 |
| Last Commit: e46a68a |
| Last Changed Date: 2020-06-30 04:46:36 -0400 (Tue, 30 Jun 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:48 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SIAMCAT PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1647/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SIAMCAT 1.8.1 Konrad Zych
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SIAMCAT |
| Version: 1.8.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SIAMCAT_1.8.1.tar.gz && rm -rf SIAMCAT.buildbin-libdir && mkdir SIAMCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIAMCAT.buildbin-libdir SIAMCAT_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SIAMCAT_1.8.1.zip && rm SIAMCAT_1.8.1.tar.gz SIAMCAT_1.8.1.zip |
| StartedAt: 2020-10-16 17:38:45 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:41:00 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 134.9 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SIAMCAT_1.8.1.tar.gz && rm -rf SIAMCAT.buildbin-libdir && mkdir SIAMCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIAMCAT.buildbin-libdir SIAMCAT_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SIAMCAT_1.8.1.zip && rm SIAMCAT_1.8.1.tar.gz SIAMCAT_1.8.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3207k 100 3207k 0 0 6987k 0 --:--:-- --:--:-- --:--:-- 7112k
install for i386
* installing *source* package 'SIAMCAT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SIAMCAT'
finding HTML links ... done
SIAMCAT-package html
accessSlot html
add.meta.pred html
assign-associations html
assign-data_split html
assign-eval_data html
assign-filt_feat html
assign-label html
assign-meta html
assign-model_list html
assign-norm_feat html
assign-orig_feat html
assign-physeq html
assign-pred_matrix html
assoc_param-methods html
associations-methods html
check.associations html
check.confounders html
create.data.split html
create.label html
data_split-methods html
eval_data-methods html
evaluate.predictions html
feat.crc.zeller html
feature_type-methods html
feature_weights-methods html
filt_feat-methods html
filt_params-methods html
filter.features html
filter.label html
get.component.classes html
get.filt_feat.matrix html
get.norm_feat.matrix html
get.orig_feat.matrix html
label-methods html
make.predictions html
meta-methods html
meta.crc.zeller html
model.evaluation.plot html
model.interpretation.plot html
model_list-methods html
model_type-methods html
models-methods html
norm_feat-methods html
norm_params-methods html
normalize.features html
orig_feat-methods html
parse.label.header html
physeq-methods html
pred_matrix-methods html
read.label html
read.lefse html
select.samples html
show-methods html
siamcat-class html
siamcat html
siamcat.to.lefse html
siamcat.to.maaslin html
siamcat_example html
summarize.features html
finding level-2 HTML links ... done
train.model html
validate.data html
weight_matrix-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SIAMCAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SIAMCAT' as SIAMCAT_1.8.1.zip
* DONE (SIAMCAT)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SIAMCAT' successfully unpacked and MD5 sums checked