| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:34 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE RGMQL PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1475/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RGMQL 1.8.0 Simone Pallotta
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
| Package: RGMQL |
| Version: 1.8.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:RGMQL.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings RGMQL_1.8.0.tar.gz |
| StartedAt: 2020-10-17 04:45:52 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 04:49:45 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 233.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RGMQL.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:RGMQL.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings RGMQL_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/RGMQL.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RGMQL/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RGMQL’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RGMQL’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 20.1Mb
sub-directories of 1Mb or more:
example 19.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘RGMQL/R/onLoad.R’:
.onLoad calls:
packageStartupMessage("Check if GMQL credentials are expired... \n")
See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
aggr-class 8.577 0.458 5.912
take 5.775 0.201 2.901
show_dataset 0.045 0.004 6.080
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.11-bioc/meat/RGMQL.Rcheck/00check.log’
for details.
RGMQL.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL RGMQL ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘RGMQL’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RGMQL)
RGMQL.Rcheck/RGMQL-Ex.timings
| name | user | system | elapsed | |
| aggr-class | 8.577 | 0.458 | 5.912 | |
| aggregate | 0.049 | 0.000 | 0.034 | |
| arrange | 0.047 | 0.004 | 0.040 | |
| collect | 0.045 | 0.004 | 0.040 | |
| compile_query | 0.344 | 0.023 | 3.115 | |
| cover-param-class | 0.089 | 0.015 | 0.063 | |
| cover | 0.058 | 0.008 | 0.050 | |
| delete_dataset | 0.001 | 0.000 | 0.000 | |
| distal-class | 0.096 | 0.003 | 0.101 | |
| download_dataset | 0.001 | 0.000 | 0.001 | |
| execute | 0.052 | 0.000 | 0.034 | |
| export_gmql | 0.815 | 0.048 | 0.870 | |
| extend | 0.056 | 0.004 | 0.042 | |
| filter | 0.155 | 0.004 | 0.114 | |
| filter_and_extract | 0.732 | 0.036 | 0.768 | |
| group_by | 0.078 | 0.004 | 0.070 | |
| import_gmql | 0.195 | 0.020 | 0.214 | |
| init_gmql | 0.039 | 0.000 | 0.340 | |
| log_job | 0.028 | 0.008 | 0.801 | |
| login_gmql | 0.024 | 0.000 | 0.556 | |
| logout_gmql | 0.046 | 0.000 | 0.662 | |
| map | 0.065 | 0.011 | 0.058 | |
| merge | 0.085 | 0.001 | 0.060 | |
| operator-class | 0.275 | 0.014 | 0.124 | |
| ordering-class | 0.133 | 0.008 | 0.051 | |
| read-function | 0.192 | 0.007 | 0.834 | |
| register_gmql | 0.000 | 0.001 | 0.000 | |
| remote_processing | 0.004 | 0.006 | 0.010 | |
| run_query | 0.001 | 0.000 | 0.000 | |
| sample_metadata | 0.038 | 0.000 | 0.745 | |
| sample_region | 0 | 0 | 0 | |
| save_query | 0.106 | 0.000 | 1.279 | |
| select | 0.062 | 0.013 | 0.054 | |
| semijoin | 0.066 | 0.012 | 0.054 | |
| setdiff | 0.077 | 0.004 | 0.058 | |
| show_dataset | 0.045 | 0.004 | 6.080 | |
| show_jobs_list | 0.049 | 0.004 | 0.726 | |
| show_queries_list | 0.036 | 0.000 | 0.376 | |
| show_samples_list | 0.033 | 0.000 | 0.350 | |
| show_schema | 0.033 | 0.000 | 0.523 | |
| stop_gmql | 0.156 | 0.012 | 0.195 | |
| stop_job | 0 | 0 | 0 | |
| take | 5.775 | 0.201 | 2.901 | |
| union | 0.057 | 0.000 | 0.045 | |
| upload_dataset | 0 | 0 | 0 | |