Xin Wang
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/PANR |
| Branch: RELEASE_3_11 |
| Last Commit: 2711f73 |
| Last Changed Date: 2020-04-27 14:26:47 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:21 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PANR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1263/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PANR 1.34.0 Xin Wang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: PANR |
| Version: 1.34.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PANR_1.34.0.tar.gz && rm -rf PANR.buildbin-libdir && mkdir PANR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PANR.buildbin-libdir PANR_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PANR_1.34.0.zip && rm PANR_1.34.0.tar.gz PANR_1.34.0.zip |
| StartedAt: 2020-10-16 17:33:23 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:34:10 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 46.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PANR_1.34.0.tar.gz && rm -rf PANR.buildbin-libdir && mkdir PANR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PANR.buildbin-libdir PANR_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PANR_1.34.0.zip && rm PANR_1.34.0.tar.gz PANR_1.34.0.zip
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install for i386
* installing *source* package 'PANR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PANR'
finding HTML links ... done
BetaMixture-class html
PAN-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/PAN-class.Rd:21: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/PAN-class.Rd:85: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/PAN-class.Rd:85: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/PAN-class.Rd:89: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/PAN-class.Rd:89: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
SNR2p html
assoScore html
buildPAN html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/buildPAN.Rd:9: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/buildPAN.Rd:9: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/buildPAN.Rd:40: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/buildPAN.Rd:44: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
cosineSim html
data-Bakal2007 html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/data-Bakal2007.Rd:29: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
edgeWeight html
exportPAN html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/exportPAN.Rd:8: file link 'write.graph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/exportPAN.Rd:8: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/exportPAN.Rd:31: file link 'write.graph' in package 'igraph' does not exist and so has been treated as a topic
fitBM html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/fitBM.Rd:40: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
fitNULL html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/fitNULL.Rd:25: file link 'dbeta' in package 'stats' does not exist and so has been treated as a topic
infer html
p2SNR html
permNULL html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/permNULL.Rd:28: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
pvclustModule html
sigModules html
summarize html
view html
viewLegend html
viewNestedModules html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/viewNestedModules.Rd:9: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/viewNestedModules.Rd:38: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
viewPAN html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/viewPAN.Rd:10: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/viewPAN.Rd:28: file link 'layout' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/viewPAN.Rd:42: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpygJIze/R.INSTALLbd828f318ee/PANR/man/viewPAN.Rd:60: file link 'layout' in package 'igraph' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PANR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PANR' as PANR_1.34.0.zip
* DONE (PANR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PANR' successfully unpacked and MD5 sums checked