Vlad Petyuk
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/MSnID |
| Branch: RELEASE_3_11 |
| Last Commit: 56cf547 |
| Last Changed Date: 2020-04-27 14:43:17 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:12 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE MSnID PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1142/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MSnID 1.22.0 Vlad Petyuk
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: MSnID |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MSnID_1.22.0.tar.gz && rm -rf MSnID.buildbin-libdir && mkdir MSnID.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSnID.buildbin-libdir MSnID_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MSnID_1.22.0.zip && rm MSnID_1.22.0.tar.gz MSnID_1.22.0.zip |
| StartedAt: 2020-10-16 18:51:15 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:52:11 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 55.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MSnID_1.22.0.tar.gz && rm -rf MSnID.buildbin-libdir && mkdir MSnID.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSnID.buildbin-libdir MSnID_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MSnID_1.22.0.zip && rm MSnID_1.22.0.tar.gz MSnID_1.22.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
20 2558k 20 512k 0 0 2596k 0 --:--:-- --:--:-- --:--:-- 2680k
100 2558k 100 2558k 0 0 6024k 0 --:--:-- --:--:-- --:--:-- 6121k
install for i386
* installing *source* package 'MSnID' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MSnID'
finding HTML links ... done
MSnID-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/MSnID-class.Rd:65: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/MSnID-class.Rd:81: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/MSnID-class.Rd:102: file link 'proteins' in package 'MSnID' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/MSnID-class.Rd:188: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
MSnID-package html
MSnIDFilter-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/MSnIDFilter-class.Rd:86: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
accessions html
apply_filter html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/apply_filter.Rd:20: file link 'MSnIDFilter' in package 'MSnID' does not exist and so has been treated as a topic
assess_missed_cleavages html
assess_termini html
correct_peak_selection html
data html
evaluate_filter html
id_quality html
infer_parsimonious_accessions html
mass_measurement_error html
optimize_filter html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/optimize_filter.Rd:48: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/optimize_filter.Rd:67: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
peptides html
psms html
read_mzIDs html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/read_mzIDs.Rd:11: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpGKN3GV/R.INSTALL25dc52991673/MSnID/man/read_mzIDs.Rd:27: missing file link 'mzR-package'
recalibrate html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MSnID' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSnID' as MSnID_1.22.0.zip
* DONE (MSnID)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MSnID' successfully unpacked and MD5 sums checked