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INSTALL report for LMGene on tokay2

This page was generated on 2020-10-17 11:56:57 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE LMGene PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 946/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LMGene 2.44.0
Blythe Durbin-Johnson
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/LMGene
Branch: RELEASE_3_11
Last Commit: 7e869c4
Last Changed Date: 2020-04-27 14:11:53 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR  OK 

Summary

Package: LMGene
Version: 2.44.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LMGene_2.44.0.tar.gz && rm -rf LMGene.buildbin-libdir && mkdir LMGene.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LMGene.buildbin-libdir LMGene_2.44.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LMGene_2.44.0.zip && rm LMGene_2.44.0.tar.gz LMGene_2.44.0.zip
StartedAt: 2020-10-16 17:04:10 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:04:45 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 34.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LMGene_2.44.0.tar.gz && rm -rf LMGene.buildbin-libdir && mkdir LMGene.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LMGene.buildbin-libdir LMGene_2.44.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LMGene_2.44.0.zip && rm LMGene_2.44.0.tar.gz LMGene_2.44.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 98001  100 98001    0     0  1708k      0 --:--:-- --:--:-- --:--:-- 1953k

install for i386

* installing *source* package 'LMGene' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LMGene'
    finding HTML links ... done
    LMGene                                  html  
    genediff                                html  
    glog                                    html  
    lnorm                                   html  
    lnormeS                                 html  
    neweS                                   html  
    norm                                    html  
    plotMeanSD                              html  
    psmeans                                 html  
    pvadjust                                html  
    rowaov                                  html  
    sample.eS                               html  
    sample.ind                              html  
    sample.mat                              html  
    tranest                                 html  
    tranestAffyProbeLevel                   html  
    transeS                                 html  
    vlist                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'LMGene' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'LMGene' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'LMGene' ...
** testing if installed package can be loaded
Warning: Package 'LMGene' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'LMGene' as LMGene_2.44.0.zip
* DONE (LMGene)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'LMGene' successfully unpacked and MD5 sums checked