Thomas Riebenbauer
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/IPO |
| Branch: RELEASE_3_11 |
| Last Commit: 69a8067 |
| Last Changed Date: 2020-04-27 15:00:22 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:54 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE IPO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 892/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IPO 1.14.0 Thomas Riebenbauer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: IPO |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IPO_1.14.0.tar.gz && rm -rf IPO.buildbin-libdir && mkdir IPO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IPO.buildbin-libdir IPO_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IPO_1.14.0.zip && rm IPO_1.14.0.tar.gz IPO_1.14.0.zip |
| StartedAt: 2020-10-16 19:02:00 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:03:11 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 71.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IPO_1.14.0.tar.gz && rm -rf IPO.buildbin-libdir && mkdir IPO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IPO.buildbin-libdir IPO_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IPO_1.14.0.zip && rm IPO_1.14.0.tar.gz IPO_1.14.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
7 211k 7 16384 0 0 255k 0 --:--:-- --:--:-- --:--:-- 280k
100 211k 100 211k 0 0 3263k 0 --:--:-- --:--:-- --:--:-- 3582k
install for i386
* installing *source* package 'IPO' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** help
*** installing help indices
converting help for package 'IPO'
finding HTML links ... done
IPO-package html
attachList html
calcPPS html
calculateXcmsSet html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:19: file link 'findPeaks.centWave' in package 'xcms' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:24: file link 'SerialParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:25: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:26: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:53: file link 'findPeaks' in package 'xcms' does not exist and so has been treated as a topic
combineParams html
createModel html
decode html
findIsotopes.CAMERA html
findIsotopes.IPO html
getBbdParameter html
getCcdParameter html
getDefaultRetCorCenterSample html
getDefaultRetGroupStartingParams html
getDefaultXcmsSetStartingParams html
getNormalizedResponse html
getRGTVValues html
optimizeRetGroup html
optimizeXcmsSet html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/optimizeXcmsSet.Rd:31: file link 'SerialParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/optimizeXcmsSet.Rd:32: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/optimizeXcmsSet.Rd:33: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
toMatrix html
typeCastParams html
writeParamsTable html
writeRScript html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'IPO' ...
** testing if installed package can be loaded
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
* MD5 sums
packaged installation of 'IPO' as IPO_1.14.0.zip
* DONE (IPO)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'IPO' successfully unpacked and MD5 sums checked