| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:54:58 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE IMPCdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 871/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IMPCdata 1.24.0 Jeremy Mason
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: IMPCdata |
| Version: 1.24.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings IMPCdata_1.24.0.tar.gz |
| StartedAt: 2020-10-17 02:21:11 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 02:22:43 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 92.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMPCdata.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings IMPCdata_1.24.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/IMPCdata.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getPhenCenters 0.985 0.065 13.982
getPipelines 0.474 0.013 5.137
printProcedures 0.458 0.028 5.014
getProcedures 0.442 0.044 6.140
getStrains 0.405 0.016 5.025
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘IMPCdata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
| name | user | system | elapsed | |
| getAlleles | 0.512 | 0.020 | 4.081 | |
| getGenes | 0.519 | 0.020 | 3.839 | |
| getIMPCDataset | 0.076 | 0.012 | 1.114 | |
| getIMPCTable | 0.300 | 0.024 | 2.593 | |
| getName | 0.070 | 0.004 | 0.800 | |
| getParameters | 0.422 | 0.012 | 3.982 | |
| getPhenCenters | 0.985 | 0.065 | 13.982 | |
| getPipelines | 0.474 | 0.013 | 5.137 | |
| getProcedures | 0.442 | 0.044 | 6.140 | |
| getStrains | 0.405 | 0.016 | 5.025 | |
| getZygosities | 0.076 | 0.008 | 0.521 | |
| printAlleles | 0.439 | 0.029 | 3.401 | |
| printGenes | 0.475 | 0.023 | 3.504 | |
| printParameters | 0.446 | 0.040 | 4.240 | |
| printPhenCenters | 0.151 | 0.008 | 4.545 | |
| printPipelines | 0.439 | 0.028 | 4.450 | |
| printProcedures | 0.458 | 0.028 | 5.014 | |
| printStrains | 0.397 | 0.024 | 3.985 | |